genome.fa.s5364.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005364.1 Hibiscus syriacus cultivar Beakdansim tig00012189_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66618

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400--471	30	2.4	30	92	0	117	30	25	20	23	1.99
458--645	31	6.0	31	75	11	168	30	18	18	32	1.95
511--628	32	3.7	31	81	9	150	30	17	17	33	1.94
483--648	63	2.7	63	96	0	298	30	17	17	34	1.93
1789--1895	45	2.4	45	82	6	119	26	15	22	35	1.94
1835--1972	64	2.2	64	82	5	163	28	18	18	34	1.95
3408--3534	21	6.0	21	78	5	130	13	20	36	29	1.91
3408--3534	42	3.0	42	83	7	152	13	20	36	29	1.91
3409--3533	64	2.0	64	84	9	166	13	20	35	30	1.92
7307--7345	3	12.7	3	94	5	69	64	0	2	33	1.08
7684--7717	17	2.1	17	88	5	52	41	2	0	55	1.15
7849--7977	61	2.1	61	82	4	154	33	17	3	45	1.64
8054--8217	60	2.7	59	76	7	152	40	4	18	35	1.72
8947--9181	119	2.0	119	89	1	364	44	14	5	35	1.70
30429--30465	16	2.3	16	100	0	74	27	27	10	35	1.90
32984--33010	13	2.1	13	100	0	54	25	7	22	44	1.79
40836--40864	14	2.0	15	93	6	51	24	13	13	48	1.79
43706--43939	121	1.9	120	84	0	306	28	25	13	32	1.94
45049--45082	17	1.9	18	94	5	61	50	0	2	47	1.16
45227--45264	15	2.4	16	86	8	60	68	0	31	0	0.90
45590--45616	13	2.1	13	100	0	54	40	44	0	14	1.46
50955--50997	21	2.2	19	83	8	50	55	0	13	30	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51440--51486	17	2.9	16	84	6	51	68	0	2	29	1.02

Tables:   1

The End!