Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005371.1 Hibiscus syriacus cultivar Beakdansim tig00012213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  362493

Tables:   1   2   

This is table  2  of  2  ( 156 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
268982--269031
7
7.4
7
86
8
77
18
30
28
24
1.97
268982--269027
13
3.5
13
93
3
74
17
30
28
23
1.97
268982--269031
20
2.5
20
90
6
75
18
30
28
24
1.97
274978--275025
24
2.0
24
100
0
96
25
8
25
41
1.83
282677--282761
42
2.0
41
95
2
152
27
16
23
32
1.96
283391--283435
2
22.5
2
100
0
90
48
0
0
51
1.00
284624--284650
2
13.5
2
100
0
54
51
0
0
48
1.00
290954--291026
31
2.4
31
90
2
112
26
9
9
54
1.63
293126--293156
16
1.9
16
93
0
53
29
9
0
61
1.28
302872--302908
2
18.5
2
100
0
74
51
0
0
48
1.00
316603--316673
34
2.1
34
84
5
90
36
12
12
38
1.82
320763--320791
15
1.9
15
100
0
58
31
6
0
62
1.22
321143--321176
2
17.0
2
100
0
68
50
0
0
50
1.00
321171--321243
20
3.6
20
74
20
71
39
2
1
56
1.22
321535--321569
17
2.1
17
100
0
70
28
22
20
28
1.98
324877--324958
40
2.0
40
100
0
164
26
17
28
28
1.97
325902--325943
18
2.3
18
91
0
66
9
19
16
54
1.69
328838--328887
23
2.2
23
82
13
59
56
0
0
44
0.99
330008--330063
29
1.9
29
86
13
80
28
3
0
67
1.07
335633--335722
29
3.1
29
67
16
69
34
20
2
43
1.64
335969--336081
60
1.9
59
85
5
156
43
7
13
35
1.73
337536--337588
26
2.0
27
88
3
81
35
30
15
18
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
337894--337946
19
2.6
20
73
8
54
60
0
1
37
1.08
339154--339233
32
2.5
32
80
9
101
40
31
10
18
1.84
343581--343711
67
2.0
67
95
3
239
44
8
18
29
1.79
343646--344462
122
6.7
122
87
2
1124
44
9
15
29
1.79
343496--343836
188
1.8
188
87
1
513
42
9
17
29
1.81
343646--344462
245
3.3
244
90
1
1264
44
9
15
29
1.79
343646--344462
367
2.2
365
87
2
1138
44
9
15
29
1.79
357258--357285
2
14.0
2
100
0
56
50
0
0
50
1.00
357333--357380
2
24.0
2
100
0
96
50
0
0
50
1.00
358244--358280
9
4.2
9
86
13
51
0
13
0
86
0.57
358245--358283
7
5.3
7
85
11
51
0
15
0
84
0.62
358244--358276
16
2.1
16
100
0
66
0
12
0
87
0.53
358234--358280
19
2.5
19
82
6
51
4
10
0
85
0.74
361264--361318
17
3.1
18
76
12
51
54
0
5
40
1.23

Tables:   1   2

The End!