Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005373.1 Hibiscus syriacus cultivar Beakdansim tig00012233_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  312417

Tables:   1   2   

This is table  2  of  2  ( 163 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
234765--234801
3
12.7
3
94
5
67
67
0
0
32
0.91
235017--235681
113
5.7
121
77
14
548
26
18
15
39
1.90
235023--235789
235
3.3
235
89
3
1105
28
18
14
38
1.90
235383--235789
113
3.6
113
93
0
663
29
19
13
37
1.90
239857--239907
19
2.6
20
90
3
77
43
5
15
35
1.71
241908--241991
24
3.5
24
80
3
89
28
17
19
34
1.95
243226--243288
25
2.6
24
80
5
72
7
14
3
74
1.16
243243--243304
17
3.6
17
72
22
58
3
16
1
79
0.95
243558--243598
19
2.1
20
86
4
57
65
0
17
17
1.27
244011--244061
19
2.6
20
90
3
77
43
5
15
35
1.71
254082--254139
27
2.2
25
76
8
62
62
0
3
34
1.12
254984--255010
3
9.0
3
100
0
54
66
0
0
33
0.92
256388--256425
3
12.7
3
100
0
76
34
0
0
65
0.93
273874--273917
20
2.2
20
100
0
88
38
25
11
25
1.89
276945--276982
16
2.4
16
95
0
67
18
28
13
39
1.88
277004--277054
16
3.2
15
86
10
66
27
21
9
41
1.84
276990--277054
32
2.0
32
82
5
78
26
20
12
41
1.87
277527--277571
7
6.4
7
81
0
54
17
0
31
51
1.46
277655--277709
2
28.0
2
78
10
51
45
7
1
45
1.41
277646--277709
19
3.1
20
86
11
85
43
7
3
45
1.48
278810--278859
20
2.5
20
100
0
100
18
16
36
30
1.92
281523--281604
23
3.6
22
78
8
94
25
23
26
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
281501--281623
44
2.8
42
75
16
117
24
20
27
27
1.99
285423--285643
117
1.9
117
83
5
286
28
14
8
48
1.73
286951--287130
65
2.8
64
86
5
229
28
16
23
31
1.96
286970--287130
65
2.5
64
91
1
250
29
16
22
31
1.96
287496--287538
21
2.0
21
82
8
52
18
0
32
48
1.48
288601--288644
7
6.3
7
83
0
52
20
0
31
47
1.50
288944--288987
2
22.0
2
81
9
54
47
2
4
45
1.35
289091--289278
2
95.0
2
76
14
176
46
3
1
47
1.29
289490--289568
20
3.7
20
73
23
79
26
31
0
41
1.56
289646--289702
2
28.5
2
96
0
105
49
0
1
49
1.11
290162--290264
13
7.1
14
72
24
81
41
3
6
47
1.48
290225--290283
18
3.3
18
84
11
68
47
1
5
45
1.34
304483--304525
17
2.5
17
84
0
68
34
9
32
23
1.87
305389--305430
22
1.9
22
95
0
75
11
23
40
23
1.88
305776--305808
16
2.1
16
100
0
66
45
18
0
36
1.49
308059--308098
21
1.9
21
89
0
62
10
25
37
27
1.88
308081--308140
20
2.9
20
78
14
59
18
26
30
25
1.98
311168--311197
12
2.4
13
94
5
53
50
26
10
13
1.73
312182--312219
20
1.9
20
94
0
67
42
0
0
57
0.98
312184--312226
9
4.7
9
81
13
52
44
0
0
55
0.99
312181--312233
23
2.4
22
81
12
63
45
0
0
54
0.99

Tables:   1   2

The End!