genome.fa.s5381.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005381.1 Hibiscus syriacus cultivar Beakdansim tig00012307_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  351681

Tables:   1   2   

This is table  2  of  2  ( 231 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110960--111018	19	3.2	18	76	7	55	50	22	13	13	1.76
111018--111070	20	2.7	19	94	5	97	15	16	16	50	1.78
111075--111160	20	4.3	20	72	16	70	19	23	22	34	1.96
111481--111686	75	2.7	73	83	8	227	22	29	25	22	1.99
115154--115488	170	2.0	171	99	0	663	38	13	23	24	1.91
117330--117434	21	5.0	21	77	11	81	24	37	24	13	1.92
117375--117434	21	2.9	21	94	0	102	26	38	25	10	1.87
120005--120212	75	2.8	75	84	5	287	23	30	24	21	1.99
120363--120455	45	2.0	46	97	2	179	50	19	15	15	1.78
122401--122425	12	2.1	12	100	0	50	0	28	0	72	0.86
122600--122653	24	2.2	24	93	0	90	40	20	18	20	1.91
123390--123477	20	4.4	20	91	0	122	25	19	30	25	1.98
123466--123559	21	4.5	21	91	1	145	22	22	15	39	1.92
123466--123571	42	2.5	42	86	3	106	24	19	16	38	1.92
124797--124847	2	25.5	2	100	0	102	50	0	0	49	1.00
128282--128323	2	21.0	2	100	0	84	50	0	0	50	1.00
130113--130648	55	9.8	55	80	8	548	29	24	15	30	1.96
130113--130648	110	4.9	110	84	7	605	29	24	15	30	1.96
130462--131030	54	10.5	54	90	1	782	20	26	18	34	1.96
130381--131030	108	6.0	108	92	1	806	21	26	18	33	1.96
131030--131109	37	2.2	37	84	4	99	20	20	16	43	1.88
131322--131446	37	3.4	37	80	4	135	24	20	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136213--136363	72	2.1	72	93	0	257	22	27	13	37	1.91
137024--137154	55	2.4	55	88	0	181	21	21	16	41	1.90
137472--137559	46	1.9	45	86	9	124	32	22	14	29	1.94
164708--164757	25	2.0	25	100	0	100	52	16	24	8	1.70
165545--165584	18	2.2	19	86	4	55	50	2	0	47	1.14
165824--165860	20	1.9	19	89	10	58	45	10	24	18	1.81
166998--167032	13	2.7	13	95	0	61	28	22	25	22	1.99
172338--172380	21	2.0	21	100	0	86	20	41	13	23	1.88
183754--184427	336	2.0	337	99	0	1341	28	19	21	30	1.98
186357--186414	12	4.8	12	78	0	62	53	1	31	13	1.50
186992--187145	77	2.0	77	100	0	308	23	20	15	40	1.91
188318--188355	20	1.9	20	88	0	58	31	23	10	34	1.89
192478--192502	9	2.8	9	100	0	50	52	0	0	48	1.00
193386--193419	2	16.5	2	93	6	59	50	0	2	47	1.16
192433--194165	594	3.0	572	92	4	2962	39	11	11	36	1.78
194777--194806	14	2.1	14	93	0	51	70	0	0	30	0.88
208186--208227	7	6.0	7	81	8	50	14	16	14	54	1.71
208186--208227	15	3.0	14	83	10	50	14	16	14	54	1.71
208287--208345	26	2.3	26	84	0	82	22	11	8	57	1.61
210281--210319	19	2.1	19	90	0	60	61	15	15	7	1.55
210315--210388	7	10.0	7	73	21	62	81	0	17	1	0.77
210311--210381	17	4.0	17	84	10	97	80	0	18	1	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210316--210381	9	7.3	9	76	15	57	81	0	16	1	0.76
210307--210390	23	3.5	23	75	15	82	80	0	17	1	0.77
210323--210389	10	6.6	10	79	6	64	82	0	16	1	0.75
210316--210390	17	4.2	17	72	17	64	82	0	16	1	0.73
212622--212847	114	2.0	114	91	0	371	32	15	21	30	1.95
215417--215471	22	2.5	22	84	0	74	32	14	16	36	1.89
215871--216417	112	4.9	113	87	2	685	38	14	18	28	1.90
216370--216433	19	3.3	19	65	26	53	46	7	26	18	1.76
216369--216436	22	3.3	22	66	26	67	48	7	26	17	1.73
216357--216456	39	2.6	39	100	0	200	46	8	24	22	1.78
216246--216565	151	2.1	151	92	1	534	40	11	20	27	1.87
216134--216677	263	2.1	264	90	1	849	38	12	20	28	1.89
216396--216692	112	2.6	112	93	1	497	38	12	19	29	1.88
218524--218696	3	58.7	3	93	3	298	34	1	0	64	1.04
219196--219230	15	2.4	15	90	4	54	85	5	8	0	0.73
220016--220054	20	2.0	20	90	5	62	35	0	5	58	1.20
220104--220148	22	2.2	20	84	8	54	37	2	4	55	1.32
220847--220879	12	2.5	14	90	9	52	24	6	9	60	1.49
231431--231497	1	67.0	1	78	0	62	88	0	11	0	0.53
231425--231480	7	8.3	7	82	11	64	85	0	14	0	0.59
231428--231480	17	3.1	17	81	10	72	86	0	13	0	0.56
231428--231497	20	3.9	18	82	15	83	87	0	12	0	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231428--231498	24	3.1	23	84	8	101	85	0	14	0	0.59
231428--231498	34	2.1	33	87	10	99	85	0	14	0	0.59
231448--231494	10	4.6	10	97	2	85	89	0	10	0	0.49
231823--231865	18	2.6	16	75	13	50	32	9	6	51	1.61
232420--232723	51	5.9	51	96	0	563	25	13	24	37	1.92
232420--233104	104	6.4	102	83	13	856	24	13	24	37	1.92
232420--232718	154	1.9	154	97	0	571	24	13	23	37	1.91
232687--232754	31	2.2	31	100	0	136	17	8	30	42	1.80
232636--232805	82	2.1	82	96	0	313	22	11	26	38	1.89
232585--232854	133	2.0	133	99	0	531	23	12	25	38	1.90
232532--232906	184	2.0	186	96	1	691	23	13	25	37	1.91
232718--233115	52	7.7	52	95	0	712	24	13	24	37	1.92
233890--233950	16	3.5	16	70	20	50	45	9	21	22	1.81
233742--234405	114	5.8	115	91	6	1022	37	13	19	28	1.90
233742--234405	231	2.9	232	91	7	1048	37	13	19	28	1.90
234653--234823	3	57.7	3	90	2	274	35	2	0	62	1.08
235819--235854	19	2.0	19	89	10	58	38	0	5	55	1.23
241325--241386	31	2.0	31	100	0	124	32	6	22	38	1.80
260896--261064	33	5.1	33	94	0	275	12	26	13	47	1.77
268786--268994	114	1.8	114	89	2	330	31	11	15	42	1.82
271867--271905	16	2.4	17	86	4	53	48	2	2	46	1.29
272744--272793	6	8.8	6	91	4	70	52	12	2	34	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272762--272800	18	2.2	18	85	0	51	56	15	0	28	1.40
281763--281818	26	2.2	26	96	0	103	26	12	17	42	1.85
284104--284141	20	1.9	20	88	0	58	21	26	10	42	1.85
289058--289109	6	8.8	6	89	2	70	51	19	0	28	1.47
289649--289741	23	4.0	23	98	0	168	29	25	8	36	1.86
302041--302077	20	1.9	20	88	5	58	29	5	13	51	1.63
306484--306508	13	1.9	13	100	0	50	52	0	0	48	1.00
306748--306793	3	15.3	3	100	0	92	67	0	0	32	0.91
307897--307976	42	1.9	42	92	2	135	52	2	5	40	1.37
315507--315534	2	14.0	2	100	0	56	50	0	0	50	1.00
315702--315748	24	1.9	25	87	12	71	38	0	4	57	1.18
321350--321456	36	3.0	36	97	0	205	39	12	18	29	1.87
325999--326040	20	2.2	19	87	12	59	7	9	4	78	1.08
329595--329627	16	2.1	16	94	0	57	33	6	27	33	1.81
342833--342944	21	5.3	20	69	16	84	22	16	24	36	1.94
342837--342949	42	2.7	42	88	0	163	23	15	23	38	1.93
342919--342982	33	1.9	33	90	0	101	18	17	25	39	1.92
343090--343123	5	6.4	5	96	3	50	26	52	20	0	1.46
343121--343159	5	7.8	5	94	0	60	38	25	35	0	1.56
343642--343692	9	6.0	9	73	13	54	0	13	52	33	1.41
343652--343692	15	2.7	15	100	0	82	0	12	53	34	1.38
343642--343683	6	7.5	6	84	15	63	0	14	52	33	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347381--347412	17	1.9	16	93	6	55	59	0	3	37	1.13

Tables:   1   2

The End!