genome.fa.s5384.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005384.1 Hibiscus syriacus cultivar Beakdansim tig00012323_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  242709

Tables:   1   2   

This is table  1  of  2  ( 141 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83--128	18	2.6	18	89	0	65	17	15	32	34	1.91
826--865	17	2.3	17	91	4	62	50	5	7	37	1.53
4263--4291	4	7.2	4	100	0	58	27	0	24	48	1.51
7862--8155	147	2.0	141	96	3	534	39	20	11	28	1.87
10817--10844	14	2.0	14	100	0	56	57	21	7	14	1.61
12447--12485	20	1.9	21	84	5	53	61	2	23	12	1.43
12476--12581	35	3.0	34	82	6	131	32	18	27	21	1.97
14374--14414	3	14.0	3	94	5	75	31	0	0	68	0.90
19089--19423	139	2.4	140	87	4	446	27	11	13	47	1.77
21063--21109	20	2.4	19	89	10	76	55	10	17	17	1.69
20851--21324	182	2.6	182	87	1	664	42	13	16	27	1.86
21236--21283	20	2.4	20	86	6	62	56	8	10	25	1.61
23520--23584	21	3.1	21	93	0	103	41	10	30	16	1.83
23618--23683	33	2.0	33	90	0	105	28	0	48	22	1.51
25478--25526	19	2.6	19	96	0	89	32	2	10	55	1.45
25639--26621	200	4.9	200	94	0	1619	36	14	16	31	1.90
28085--28184	6	16.7	6	82	4	85	40	7	32	21	1.80
28085--28184	12	8.3	12	87	4	121	40	7	32	21	1.80
29401--30037	183	3.5	183	95	1	1136	35	14	17	32	1.90
39256--39331	31	2.5	30	77	16	77	5	19	6	68	1.32
39268--39331	27	2.3	27	84	7	76	6	18	7	67	1.38
40237--40270	12	2.9	12	95	4	61	85	5	0	8	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48343--48399	21	2.7	21	89	5	80	47	15	36	0	1.46
48364--48399	12	3.2	12	77	22	51	50	13	36	0	1.43
48793--48949	43	3.7	42	80	5	163	28	19	17	34	1.95
48787--48949	85	1.9	85	82	2	202	28	20	17	33	1.95
49086--49166	32	2.5	32	95	0	144	37	34	8	19	1.83
49481--49542	3	20.0	3	80	6	70	35	1	0	62	1.05
49481--49542	28	2.2	28	82	5	72	35	1	0	62	1.05
54080--54131	21	2.5	21	84	9	70	76	3	19	0	0.93
54085--54131	14	3.4	14	81	18	62	78	2	19	0	0.85
56750--56864	37	3.2	37	78	8	112	33	16	11	38	1.84
56741--56848	36	2.9	38	79	6	116	33	15	11	39	1.83
56933--57191	140	1.9	139	83	4	342	31	27	15	25	1.96
57431--57491	3	21.0	3	86	6	90	32	1	0	65	1.02
61329--61365	6	6.0	6	90	3	56	37	0	0	62	0.96
62623--62664	2	20.5	2	95	4	75	47	2	0	50	1.14
62715--62745	2	15.5	2	93	0	53	45	0	3	51	1.17
62803--62848	13	3.5	13	85	8	58	26	6	0	67	1.15
66756--66810	23	2.3	24	79	14	69	16	9	1	72	1.18
66794--66842	3	16.7	3	83	12	66	32	2	0	65	1.04
70445--72241	105	17.3	105	88	4	2485	33	25	18	22	1.97
70445--72241	212	8.7	210	88	4	2465	33	25	18	22	1.97
71386--71541	43	3.4	43	67	14	125	33	26	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74022--74104	23	3.2	27	73	16	84	18	7	1	73	1.12
74084--74130	3	15.7	3	86	8	69	34	2	0	63	1.06
76097--76150	28	1.9	29	82	14	69	59	1	0	38	1.08
95591--95635	15	3.0	15	86	0	63	55	0	0	44	0.99
95631--95801	22	7.2	22	66	19	87	36	0	11	52	1.37
95643--95678	14	2.5	15	90	9	65	38	0	0	61	0.96
95672--95750	18	4.4	18	71	23	58	32	0	12	54	1.38
95658--95755	32	3.4	32	71	26	108	35	0	10	54	1.35
95658--96323	54	12.4	54	74	15	403	34	0	12	52	1.41
95685--96174	80	6.2	78	83	10	488	34	0	12	52	1.43
95858--95943	32	2.7	32	98	0	163	34	0	12	52	1.40
95779--96174	112	3.6	112	79	15	454	33	0	13	52	1.44
95882--95938	18	3.4	18	69	18	59	33	0	12	54	1.38
95971--96077	32	3.6	31	75	23	124	35	0	11	53	1.37
96003--96045	22	2.0	22	95	0	77	37	0	11	51	1.39
95891--96323	134	3.2	134	96	1	787	34	0	12	52	1.41
96048--96095	22	2.4	18	73	23	51	33	0	14	52	1.42
96104--96211	32	3.7	31	75	23	126	36	0	12	51	1.39
96159--96308	80	1.9	80	97	0	282	34	0	12	52	1.39
96236--96286	14	3.1	17	70	18	54	33	0	11	54	1.37
96271--96313	22	2.0	22	100	0	86	39	0	9	51	1.34
96338--96396	31	1.9	31	92	0	100	42	10	6	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101895--101950	7	8.0	7	100	0	112	14	28	0	57	1.38
102187--102218	16	1.9	17	93	6	57	34	21	6	37	1.79
105714--106185	182	2.6	180	87	3	644	43	13	16	26	1.86
105929--105973	21	2.1	21	95	0	81	62	8	13	15	1.54
106097--106152	20	2.8	19	78	7	58	53	8	16	21	1.69
108366--108430	21	3.1	21	90	0	103	40	9	30	20	1.83
108464--108529	33	2.0	33	90	0	105	28	0	48	22	1.51
110319--110367	19	2.6	19	96	0	89	32	2	10	55	1.45
110523--111443	200	4.8	180	84	11	1087	36	14	17	31	1.90
110703--111443	200	3.7	200	95	1	1299	36	14	17	31	1.89
112904--112961	6	9.7	6	75	7	55	41	8	31	18	1.81
112921--112983	3	21.0	3	74	6	56	38	6	31	23	1.80
112904--112982	18	4.6	18	78	15	67	39	7	31	21	1.81
114186--114946	183	4.2	183	96	0	1364	35	14	16	33	1.89
117401--117465	25	2.6	25	97	0	121	40	10	12	36	1.78
117812--117884	23	3.2	23	78	7	85	34	5	19	41	1.74
118301--118373	23	3.2	23	88	0	110	34	5	20	39	1.76
118301--118398	46	2.1	45	81	7	108	33	7	17	41	1.77
118790--118862	23	3.2	23	84	0	101	34	5	19	41	1.74
118790--118887	46	2.1	45	83	7	117	33	7	16	42	1.75
117468--119753	489	4.7	489	97	0	4297	40	7	10	40	1.68
119279--119351	23	3.2	23	82	0	92	35	6	19	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120659--120734	2	38.0	2	86	5	109	48	0	1	50	1.09
122223--122288	30	2.2	30	82	15	75	9	10	6	74	1.22
125171--125372	104	1.9	104	96	2	379	46	18	13	20	1.83
128825--128886	26	2.4	26	88	0	88	54	4	24	16	1.61
129881--129921	19	2.2	20	86	8	59	39	14	14	31	1.87
130293--130499	57	4.0	48	78	17	200	32	10	16	39	1.83
130339--130512	57	3.1	57	90	0	287	33	10	17	38	1.84
133788--133844	12	4.8	12	76	4	53	21	14	17	47	1.82
133788--133859	24	3.0	24	79	0	81	20	12	16	50	1.78
133880--134193	154	2.0	154	83	6	393	23	11	28	36	1.90
134773--134959	57	3.3	57	86	2	270	39	11	16	32	1.84
139566--139617	21	2.5	21	87	0	68	34	30	17	17	1.93
152178--152329	3	51.0	3	73	18	95	30	2	5	60	1.34
152256--152329	11	6.5	11	73	17	71	35	2	2	59	1.26
152260--152329	8	8.6	8	71	20	56	34	2	2	60	1.26
152257--152325	20	3.5	19	75	16	68	33	2	2	60	1.26
152800--152829	2	15.0	2	100	0	60	50	0	0	50	1.00
154594--154628	16	2.1	16	89	5	52	48	0	2	48	1.16
162497--162544	3	15.7	3	78	4	51	62	4	2	31	1.26
163803--164022	94	2.4	94	89	4	331	37	13	16	33	1.87
163994--164172	67	2.7	65	79	3	171	38	14	18	28	1.90
167190--167259	6	11.2	6	79	14	79	0	18	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167185--167255	21	3.5	20	83	11	92	0	18	0	81	0.69
167194--167252	13	4.4	14	77	14	61	0	18	0	81	0.69
167185--167259	27	3.0	25	82	7	89	0	18	0	81	0.69
167194--167250	19	2.8	20	86	7	80	0	19	0	80	0.71
167200--167272	33	2.2	35	83	11	91	1	19	1	78	0.91
168143--168188	23	2.0	23	86	0	65	30	26	23	19	1.98
168875--168994	64	1.9	63	84	1	159	25	17	20	36	1.94
175110--175170	23	2.7	23	92	5	97	31	27	22	18	1.97
178286--178322	14	2.5	15	86	8	58	5	24	0	70	1.08
179667--179717	6	8.7	6	75	12	52	76	1	5	15	1.07

Tables:   1   2