Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005384.1 Hibiscus syriacus cultivar Beakdansim tig00012323_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  242709

Tables:   1   2   

This is table  2  of  2  ( 141 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
180509--180552
21
2.1
21
100
0
88
34
13
34
18
1.90
188113--188435
178
1.8
180
83
6
442
41
9
8
40
1.69
188219--189035
418
2.0
415
87
3
1203
39
9
8
43
1.66
190234--190504
78
3.5
78
87
1
398
11
25
12
49
1.75
191629--191717
31
2.8
31
81
6
90
52
7
5
33
1.54
191584--191717
34
4.2
31
70
17
87
51
8
4
35
1.52
193658--193734
3
25.7
3
79
10
77
64
0
5
29
1.15
193676--193734
21
2.8
22
89
7
95
61
0
5
33
1.18
204320--204360
20
2.0
21
85
4
57
58
2
2
36
1.24
205744--205823
3
26.7
3
92
0
133
62
0
2
35
1.09
206142--206583
113
3.9
112
90
2
661
29
19
14
37
1.91
206142--206587
226
2.0
225
91
0
730
29
18
14
37
1.91
208158--208194
16
2.3
16
90
9
58
54
5
8
32
1.53
208522--208575
1
54.0
1
81
0
63
0
9
0
90
0.45
208523--208577
9
6.1
9
87
8
85
0
10
0
89
0.50
208511--208580
19
3.6
19
85
12
90
0
15
0
84
0.63
208511--208580
28
2.5
28
88
4
97
0
15
0
84
0.63
221360--221442
3
27.7
3
92
0
139
62
0
2
34
1.08
229525--229572
2
24.5
2
95
4
89
47
0
0
52
1.00
230986--231030
18
2.8
17
83
16
60
53
0
0
46
1.00
239795--239971
90
2.0
89
89
1
273
48
6
9
35
1.61

Tables:   1   2

The End!