genome.fa.s54.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000054.1 Hibiscus syriacus cultivar Beakdansim tig00000081_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87951

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2274--2332	31	1.9	31	92	0	100	42	10	6	40	1.65
2424--2465	21	2.0	21	100	0	84	33	0	14	52	1.42
2927--2965	14	2.8	14	84	7	53	12	23	0	64	1.28
9461--9561	32	3.2	32	80	1	114	21	28	18	30	1.97
15266--15342	30	2.6	30	81	2	84	25	9	25	38	1.85
18176--18207	16	2.0	16	93	0	55	15	31	40	12	1.85
18281--18335	19	3.0	18	76	10	58	54	3	0	41	1.18
18282--18322	19	2.2	19	90	0	64	51	2	0	46	1.14
20024--20058	19	1.9	17	88	11	52	48	2	2	45	1.32
20396--20432	15	2.5	14	87	12	56	70	8	0	21	1.13
22315--22373	27	2.2	27	87	3	84	38	0	11	49	1.40
22302--22373	27	2.7	26	80	8	83	36	1	9	52	1.43
22604--22631	4	7.0	4	100	0	56	25	0	75	0	0.81
25553--25592	18	2.2	19	86	4	55	25	5	10	60	1.49
26182--26297	42	2.8	42	95	0	205	18	19	18	43	1.88
26467--26515	21	2.2	23	85	7	66	51	0	0	48	1.00
26475--26543	22	3.1	23	79	10	72	46	0	0	53	1.00
26493--26653	31	5.4	31	69	23	91	45	1	1	51	1.17
26467--26602	52	2.6	51	77	19	138	48	0	0	50	1.11
26508--26610	54	1.9	52	84	11	138	48	0	0	49	1.14
26652--26714	34	1.9	31	84	15	83	50	3	4	41	1.39
26823--26892	20	3.5	20	96	0	131	35	14	10	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26823--26901	40	2.0	40	89	0	122	35	15	8	40	1.78
26875--26941	15	4.5	15	84	3	91	34	19	7	38	1.80
26875--26946	30	2.4	30	97	2	137	31	19	6	41	1.78
27354--27405	22	2.4	22	93	0	86	36	17	19	26	1.94
27688--27757	20	3.5	20	70	3	68	17	21	20	41	1.90
27663--27758	41	2.3	41	91	3	149	21	19	19	38	1.93
27749--27862	22	5.4	22	81	6	103	18	17	23	40	1.91
27770--27818	19	2.5	20	93	6	91	18	20	18	42	1.89
27731--27884	63	2.5	61	87	5	202	18	17	22	42	1.89
28616--28750	22	6.4	22	71	10	120	37	22	20	20	1.95
28592--28688	41	2.3	42	89	3	142	38	20	18	22	1.94
28616--28750	63	2.1	63	93	0	234	37	22	20	20	1.95
28682--28921	41	5.8	41	89	6	223	37	25	18	17	1.93
28742--28894	20	7.5	20	70	4	126	37	28	18	15	1.92
28714--28921	82	2.5	80	87	8	303	37	26	18	17	1.93
28739--28925	21	9.1	21	69	6	132	37	27	17	17	1.92
50659--50705	22	2.1	22	84	4	58	38	23	10	27	1.88
57081--57109	14	2.1	14	100	0	58	37	13	0	48	1.43
59886--60101	20	10.6	20	76	6	157	27	24	18	29	1.98
60277--60319	22	2.0	22	90	0	68	23	39	16	20	1.92
60706--60812	20	5.4	20	83	3	101	14	17	22	44	1.86
60776--60819	20	2.2	20	91	0	70	11	13	20	54	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62725--62789	20	3.2	20	95	0	112	33	26	20	20	1.96
62832--62879	20	2.4	20	89	6	71	18	18	27	35	1.95
63070--63115	20	2.3	20	96	0	83	41	26	17	15	1.88
63160--63207	20	2.4	20	85	0	60	22	18	25	33	1.97
62742--63424	328	2.1	328	94	0	1204	30	17	18	34	1.94
63468--63514	20	2.5	19	86	6	60	17	19	25	38	1.92
63997--64038	21	2.2	20	87	12	61	21	33	19	26	1.97
65499--65533	14	2.5	14	100	0	70	31	0	20	48	1.50
65708--66026	20	16.9	20	77	11	314	24	18	21	34	1.96
65707--65964	74	3.4	74	87	3	354	24	20	22	33	1.97
65997--66259	140	1.9	140	96	0	490	41	14	14	30	1.84
68396--68432	14	2.5	15	91	4	58	5	18	21	54	1.64
68622--68675	24	2.2	24	87	6	74	40	18	20	20	1.91
69495--69581	20	4.3	20	88	2	104	25	19	28	26	1.99
69504--69621	20	5.9	19	90	2	101	25	20	22	31	1.98
69496--69683	40	4.7	40	75	10	125	29	19	23	27	1.98
69618--69672	21	2.6	21	75	13	58	41	18	21	18	1.90
75083--75129	19	2.4	19	75	13	51	48	2	0	48	1.13
82494--82570	35	2.2	36	88	6	113	41	22	1	35	1.62
82962--83207	130	1.9	128	91	1	402	36	15	12	36	1.85
83136--83180	21	2.1	21	84	8	56	33	13	15	37	1.86
83669--83701	16	1.9	18	88	11	52	63	6	3	27	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84180--84248	27	2.5	26	83	6	75	40	1	1	56	1.17

Tables:   1

The End!