genome.fa.s5406.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005406.1 Hibiscus syriacus cultivar Beakdansim tig00012396_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57263

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2595--2633	21	2.0	20	85	10	53	51	0	15	33	1.44
16788--16821	17	2.0	17	100	0	68	11	35	5	47	1.65
20841--20901	6	9.3	6	74	22	52	77	0	4	18	0.95
20844--20913	22	3.0	21	75	21	61	75	1	7	15	1.08
22741--23137	122	3.3	121	84	1	454	28	14	23	33	1.94
23175--23363	83	2.3	83	84	1	236	19	17	29	33	1.95
28353--28405	13	3.8	13	80	11	61	3	13	1	81	0.92
32933--33001	5	13.8	5	72	15	54	73	1	5	18	1.10
32940--33009	23	2.9	24	85	10	81	72	1	7	18	1.14
33484--33510	12	2.2	12	100	0	54	55	0	29	14	1.40
33741--33913	34	5.0	34	74	13	131	53	2	16	26	1.57
33743--33917	74	2.4	75	91	2	284	53	2	17	27	1.56
35080--35105	13	2.0	13	100	0	52	0	15	15	69	1.20
36245--36276	14	2.3	14	100	0	64	28	6	28	37	1.81
36330--36362	4	8.2	4	100	0	66	24	0	0	75	0.80
44226--44256	16	1.9	16	93	0	53	29	0	12	58	1.35
44367--44401	18	2.0	17	88	5	52	17	22	37	22	1.94
44913--44957	23	2.0	23	100	0	90	42	26	4	26	1.74
47162--47206	13	3.5	13	87	0	63	26	17	15	40	1.90
47188--47353	85	2.0	85	91	2	271	31	19	16	31	1.95
47373--47429	2	28.5	2	100	0	114	49	0	0	50	1.00
54091--54132	13	3.2	13	96	0	75	28	19	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55155--55447	5	59.6	5	87	12	423	40	0	0	59	0.97

Tables:   1

The End!