genome.fa.s542.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000542.1 Hibiscus syriacus cultivar Beakdansim tig00001052_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  715625

Tables:   1   2   3   

This is table  3  of  3  ( 272 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658996--659029	15	2.3	15	89	0	50	17	29	0	52	1.45
660070--660120	25	2.0	25	84	0	66	27	43	9	19	1.82
661110--661147	20	1.9	20	100	0	76	73	7	5	13	1.22
662366--662423	29	2.0	29	96	0	107	62	15	5	17	1.50
670590--670615	10	2.6	10	100	0	52	0	0	7	92	0.39
670969--671005	15	2.4	16	90	4	58	70	5	10	13	1.32
672875--672930	5	10.6	5	80	14	51	80	1	16	1	0.88
675822--675857	2	18.5	2	94	5	65	50	0	0	50	1.00
677710--677781	17	4.2	17	81	10	67	38	9	12	38	1.76
677737--677780	18	2.5	18	89	10	65	43	13	6	36	1.71
679748--679800	17	3.1	17	86	5	72	39	5	15	39	1.70
679899--679929	9	3.4	9	100	0	62	32	22	22	22	1.98
679890--679931	18	2.3	18	79	0	57	28	19	21	30	1.97
683086--683157	17	4.2	16	82	10	72	40	9	11	38	1.74
683096--683156	17	3.5	17	86	8	79	42	11	9	36	1.74
688997--689056	30	2.0	31	83	3	77	26	8	10	55	1.61
689964--690013	18	2.6	20	84	9	68	36	16	6	42	1.72
690741--690781	8	5.0	8	86	13	57	78	0	21	0	0.76
690741--690781	18	2.5	16	82	17	57	78	0	21	0	0.76
690741--690781	13	3.2	13	83	16	59	78	0	21	0	0.76
690748--690781	18	1.9	17	94	5	59	79	0	20	0	0.73
697878--697939	21	3.0	21	80	13	74	25	38	24	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702291--702350	30	2.0	31	83	3	77	26	8	10	55	1.61
703259--703309	20	2.6	20	90	3	77	35	15	5	43	1.71
703729--703765	18	2.0	20	89	10	60	27	10	0	62	1.28
704129--704208	35	2.2	37	91	4	128	27	3	37	31	1.74
707573--707611	19	2.0	20	95	5	71	5	12	0	82	0.83
709096--709180	43	2.0	43	100	0	170	28	25	18	27	1.98
709631--709673	18	2.4	18	88	11	63	41	13	6	37	1.72
711728--711760	12	2.6	13	85	9	50	3	15	0	81	0.80
714349--714433	43	2.0	43	100	0	170	28	25	18	27	1.98
714884--714926	18	2.4	18	88	11	63	41	13	6	37	1.72

Tables:   1   2   3

The End!