genome.fa.s5439.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005439.1 Hibiscus syriacus cultivar Beakdansim tig00012466_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52839

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15381--15496	42	2.8	42	90	0	187	50	21	7	19	1.72
17199--17249	15	3.4	15	86	0	66	11	66	13	7	1.43
20784--20808	7	3.6	7	100	0	50	32	12	0	56	1.36
20851--20882	14	2.2	15	94	5	57	37	6	0	56	1.25
21607--21658	20	2.5	21	81	3	61	40	19	23	17	1.91
21647--21781	20	6.7	20	80	7	121	33	24	17	24	1.96
21644--21775	61	2.2	61	87	0	183	35	24	16	23	1.95
21949--21992	22	2.0	22	95	0	79	20	45	15	18	1.85
22255--22313	20	3.0	20	84	0	64	16	18	20	44	1.87
23633--23677	18	2.5	18	88	0	72	26	44	15	13	1.83
24160--24226	20	3.4	20	81	2	73	38	23	22	14	1.92
24199--24262	19	3.6	19	74	20	75	46	20	20	12	1.82
24274--24364	14	5.9	14	73	20	74	10	18	21	48	1.79
24269--24380	33	3.4	33	96	1	199	11	19	21	47	1.81
24365--24420	20	2.8	19	86	7	76	17	23	23	35	1.95
24787--24874	41	2.1	41	85	2	122	21	43	14	20	1.88
26288--26323	14	2.6	14	90	0	54	30	0	22	47	1.52
26428--26465	20	1.9	20	88	0	58	39	23	18	18	1.92
26539--26622	20	4.2	20	78	6	107	16	22	22	38	1.93
26515--26602	40	2.4	36	80	12	90	18	20	19	42	1.90
26836--26885	20	2.5	20	80	0	73	22	18	22	38	1.94
26912--26984	21	3.5	21	92	1	112	21	23	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26911--26999	41	2.1	42	79	2	99	26	21	16	34	1.95
27769--27822	24	2.2	24	90	0	81	22	16	20	40	1.91
27997--28033	12	3.1	12	92	0	65	70	0	27	2	1.01
30325--30422	19	5.7	19	67	22	81	42	20	21	15	1.88
30326--30425	33	3.0	33	91	2	157	41	20	21	18	1.91
30433--30489	14	3.7	14	75	20	60	8	24	22	43	1.81
30418--30507	33	2.7	33	94	0	153	13	22	21	43	1.87
30447--30507	19	3.5	19	72	21	69	11	22	21	44	1.84
30614--30650	14	2.6	14	91	0	65	45	24	0	29	1.53
32027--32142	21	5.5	21	67	10	58	24	21	31	22	1.98
32037--32212	84	2.1	84	95	0	316	24	17	36	22	1.94
32046--32209	42	3.9	42	77	0	166	23	17	36	22	1.94
32434--32615	91	2.0	89	88	6	265	47	18	12	21	1.81
34298--34443	19	8.1	19	70	17	96	42	19	24	13	1.87
34323--34421	33	3.0	33	89	1	144	39	21	26	13	1.90
34439--34483	19	2.4	19	92	0	72	8	15	26	48	1.74
35037--35089	20	2.7	20	93	0	88	26	20	28	24	1.99
35098--35151	20	2.7	20	97	0	99	25	18	24	31	1.97
35038--35154	61	1.9	61	85	0	162	23	17	24	33	1.97
35038--35172	61	2.2	61	81	2	155	22	20	24	32	1.98
35222--35262	21	2.0	21	85	0	55	34	31	17	17	1.93
38445--38489	22	2.0	22	91	0	72	28	13	13	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39884--39919	18	2.0	18	88	0	54	50	5	0	44	1.25
41661--41728	34	2.0	35	82	8	86	61	5	0	32	1.20
41706--41797	30	3.2	29	87	7	125	52	10	0	36	1.37
41790--41892	33	3.1	32	83	10	127	40	20	3	34	1.71
41788--42040	36	7.3	35	76	10	166	39	15	5	39	1.71
41801--41909	34	3.3	32	81	8	112	40	19	4	35	1.72
41845--42040	36	5.6	36	78	6	172	38	13	7	41	1.72
41845--42039	72	2.8	71	80	6	200	37	13	7	41	1.72
42016--42121	38	2.8	38	91	5	162	44	12	5	37	1.66
45640--45689	26	2.0	26	84	11	68	54	18	4	24	1.61
47851--48465	51	11.8	54	86	8	352	25	26	18	30	1.98
48038--49075	51	20.3	51	90	2	1591	24	25	19	30	1.98
48038--49075	154	6.8	154	90	1	1631	24	25	19	30	1.98
47923--49075	103	11.2	102	89	4	1594	24	25	19	30	1.98

Tables:   1

The End!