genome.fa.s5441.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005441.1 Hibiscus syriacus cultivar Beakdansim tig00012469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66252

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598--702	31	3.4	31	80	1	104	42	6	6	43	1.57
876--919	22	1.9	24	90	9	74	38	0	0	61	0.96
870--923	28	2.0	27	82	10	65	37	0	0	62	0.95
2685--2732	23	2.1	23	88	0	69	35	12	18	33	1.89
3138--3210	23	3.2	23	90	0	110	38	20	5	35	1.76
3573--3635	23	2.7	23	92	0	99	38	20	4	36	1.74
3999--4057	22	2.6	23	89	2	84	38	16	5	38	1.71
3975--4057	45	1.9	42	82	7	103	39	19	4	36	1.73
2799--4676	425	4.4	425	91	5	3027	39	12	7	40	1.71
4410--4480	22	3.2	23	82	6	83	40	22	4	32	1.73
6030--6095	3	22.0	3	77	0	69	24	33	6	36	1.80
6031--6119	12	7.4	12	84	0	88	22	32	7	37	1.83
6043--6119	36	2.1	36	90	0	118	22	32	9	36	1.85
7693--8877	194	6.2	194	89	7	1717	30	18	15	35	1.92
7888--8877	370	2.6	373	91	7	1537	30	18	15	35	1.92
8258--8877	193	3.2	195	95	3	1083	30	18	15	35	1.92
8988--9036	19	2.6	19	93	0	80	57	10	2	30	1.43
10827--10892	33	2.0	33	90	0	105	22	48	0	28	1.51
12988--13040	24	2.2	24	83	6	63	26	7	13	52	1.66
13180--13222	20	2.3	18	85	14	61	20	16	11	51	1.75
13185--13231	20	2.4	19	82	10	67	19	17	10	53	1.72
13514--14004	229	2.1	228	94	1	860	39	7	7	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18545--18619	23	3.2	23	82	1	96	9	12	20	58	1.60
18939--18990	25	2.0	26	92	3	88	38	3	5	51	1.44
19116--19171	18	3.1	18	80	14	55	32	3	1	62	1.23
19163--19205	22	2.0	21	86	13	61	39	0	2	58	1.11
24503--24586	33	2.6	32	84	1	114	44	32	10	13	1.78
24637--24776	63	2.2	64	94	3	246	45	22	8	23	1.79
26913--26967	28	2.0	28	96	0	101	25	7	3	63	1.37
27688--27718	12	2.6	12	89	0	53	41	12	16	29	1.85
30384--30733	120	2.9	120	83	3	443	23	14	19	43	1.87
36434--36488	27	2.0	27	86	6	76	45	0	0	54	0.99
36536--36585	22	2.3	21	93	3	82	24	4	2	70	1.15
36525--36591	31	2.2	29	82	15	75	23	2	2	70	1.15
37500--37570	34	2.1	34	91	0	115	36	12	15	35	1.86
41166--41851	112	6.1	112	90	0	1034	46	13	14	25	1.81
41722--42170	182	2.5	182	90	2	681	45	13	13	27	1.81
44085--44125	21	2.0	21	95	0	73	56	4	19	19	1.60
50154--50239	45	1.9	45	95	0	154	22	34	24	18	1.96
51957--52008	24	2.2	24	100	0	104	42	28	21	7	1.80
52995--53083	42	2.1	42	97	0	169	30	15	14	39	1.88
54780--54809	15	2.0	15	93	0	51	56	3	6	33	1.42
55218--55247	14	2.1	14	93	0	51	36	0	0	63	0.95
60517--60551	18	1.9	18	88	11	54	54	5	17	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61425--61728	149	2.0	149	98	0	581	26	17	21	34	1.96
61707--61751	23	2.0	23	86	0	63	20	24	28	26	1.99
63406--63456	20	2.5	21	81	12	61	33	0	1	64	1.05
63723--63787	25	2.8	23	88	6	87	6	32	0	61	1.21
63726--63770	10	4.3	10	81	10	54	6	31	0	62	1.21

Tables:   1

The End!