genome.fa.s5454.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005454.1 Hibiscus syriacus cultivar Beakdansim tig00012493_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  374245

Tables:   1   2   

This is table  2  of  2  ( 199 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214363--214447	2	42.5	2	100	0	170	49	0	0	50	1.00
215313--215555	55	4.4	55	80	9	271	24	22	27	25	2.00
215345--215493	27	5.4	27	68	19	110	24	22	28	24	1.99
215313--215558	111	2.2	112	88	3	356	23	22	27	26	2.00
215257--215575	55	5.8	54	75	15	237	25	21	26	26	2.00
226960--226987	4	7.0	4	100	0	56	25	0	25	50	1.50
227351--227800	230	2.0	227	94	1	783	45	8	7	39	1.61
227865--227914	20	2.5	20	81	12	75	52	10	16	22	1.73
228031--228077	20	2.4	19	79	10	58	55	8	17	19	1.67
230388--230453	33	2.0	33	87	0	96	28	1	45	24	1.62
232247--232304	19	3.1	19	97	0	107	32	3	10	53	1.52
232391--234005	198	8.1	199	95	1	2861	37	14	15	32	1.88
232391--234005	397	4.1	398	97	0	3001	37	14	15	32	1.88
235467--235528	18	3.4	18	88	0	88	38	6	33	20	1.79
235467--235528	6	10.3	6	83	0	61	38	6	33	20	1.79
235482--235532	3	17.0	3	83	0	66	37	3	33	25	1.74
235470--235532	12	5.2	12	90	0	81	36	6	33	23	1.80
238670--238732	23	2.7	23	90	0	90	36	6	19	38	1.77
238670--238742	23	3.2	23	86	3	85	35	5	19	39	1.75
239095--239157	23	2.7	23	90	0	90	36	6	19	38	1.77
239095--239167	23	3.2	23	86	3	85	35	5	19	39	1.75
239525--239587	23	2.7	23	90	0	90	36	6	19	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239525--239597	23	3.2	23	86	3	85	35	5	19	39	1.75
238571--239867	430	3.0	431	99	0	2545	39	8	13	38	1.74
249456--249498	18	2.3	18	80	4	50	27	13	2	55	1.51
249774--249814	2	20.5	2	100	0	82	51	0	0	48	1.00
251271--251317	23	2.0	23	83	8	58	34	25	0	40	1.56
254271--254295	2	12.5	2	100	0	50	48	0	0	52	1.00
264758--264829	36	2.0	36	91	0	117	12	30	12	44	1.79
274205--274246	2	21.0	2	100	0	84	50	0	0	50	1.00
274410--274442	2	16.5	2	100	0	66	51	0	0	48	1.00
278500--278528	13	2.2	13	100	0	58	72	10	6	10	1.28
279850--279884	12	3.0	12	91	4	54	60	0	0	40	0.97
280290--280352	11	5.9	11	75	14	69	41	1	0	57	1.08
283083--283224	73	1.9	73	100	0	284	21	33	14	30	1.93
288114--288148	16	2.1	17	89	5	54	42	8	0	48	1.33
288152--288246	34	2.9	34	75	7	106	37	8	2	51	1.44
289101--289164	23	2.8	23	81	9	85	29	26	25	18	1.98
289180--289397	103	2.1	103	96	0	400	36	23	14	25	1.93
289846--289973	64	2.0	67	92	4	217	27	18	19	34	1.95
289858--290018	64	2.5	63	85	5	207	27	20	18	34	1.95
296123--296176	23	2.3	23	81	6	74	25	24	27	22	2.00
296191--296408	103	2.1	103	94	0	382	36	23	13	26	1.92
304502--305409	336	2.6	335	79	10	892	36	18	17	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307433--307472	17	2.4	17	95	0	71	27	22	20	30	1.98
307659--307720	31	2.0	31	90	3	99	37	14	24	24	1.93
307808--307904	30	3.2	31	79	8	110	42	5	6	46	1.51
307823--307896	31	2.5	30	82	8	89	44	4	6	44	1.49
308700--308749	3	16.7	3	95	0	91	36	0	0	64	0.94
309222--309260	20	2.0	20	94	0	69	74	5	20	0	1.01
309220--309268	21	2.4	20	86	3	71	71	8	20	0	1.11
321906--321947	19	2.2	20	91	4	68	30	4	11	52	1.59
322713--323781	84	12.7	84	97	0	1996	27	13	20	37	1.91
324510--325069	113	5.0	113	97	0	1030	37	14	18	29	1.90
325389--325438	3	16.7	3	95	0	91	36	0	0	64	0.94
332582--332654	35	2.1	35	86	0	101	32	28	27	10	1.91
332731--332814	24	3.5	24	85	3	125	35	20	16	27	1.94
332731--332821	47	1.9	48	88	6	141	37	18	16	27	1.92
335290--335331	18	2.3	18	95	0	75	9	21	50	19	1.75
337288--337360	35	2.1	35	86	0	101	34	27	27	10	1.90
337437--337527	24	3.8	24	88	2	139	37	19	15	27	1.92
337437--337527	47	1.9	48	93	2	157	37	19	15	27	1.92
341533--341776	36	6.8	36	85	2	303	18	23	22	35	1.96
341533--341776	107	2.3	108	88	1	364	18	23	22	35	1.96
344300--344340	20	2.0	21	90	4	66	39	0	0	60	0.96
346477--346530	26	2.1	26	92	0	90	50	0	11	38	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348631--348670	15	2.7	15	100	0	80	22	27	15	35	1.94
351003--351048	24	2.0	23	86	4	65	34	0	4	60	1.16
353185--353229	20	2.3	19	84	3	54	35	0	2	62	1.08
353180--353235	29	2.0	30	83	13	75	37	0	1	60	1.07
353228--353334	3	35.7	3	92	0	178	62	0	2	34	1.10
353653--354175	113	4.6	113	97	0	960	28	18	14	38	1.90
354927--355465	250	2.2	249	96	1	990	36	21	13	27	1.92
354927--355477	83	6.6	83	96	0	971	36	21	13	27	1.92
356144--356189	19	2.7	16	83	10	56	54	6	4	34	1.46
369307--369360	27	2.0	27	85	7	74	37	0	1	61	1.07
369353--369450	3	32.7	3	81	11	112	59	0	3	37	1.13
369357--369450	45	2.2	41	87	12	127	59	0	3	37	1.13
369344--369450	10	10.5	10	76	16	96	57	0	2	39	1.13

Tables:   1   2

The End!