genome.fa.s5464.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005464.1 Hibiscus syriacus cultivar Beakdansim tig00012515_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156960

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968--997	6	5.0	6	100	0	60	0	66	0	33	0.92
3188--3223	14	2.6	14	81	0	54	63	13	8	13	1.50
10102--10192	31	3.0	31	95	3	159	34	6	16	42	1.74
10261--10301	21	2.0	21	95	0	73	24	19	29	26	1.98
10331--10370	20	1.9	21	85	10	55	37	37	10	15	1.80
14918--14974	20	3.0	20	82	7	82	26	29	22	21	1.99
15539--15659	63	1.9	63	89	0	188	23	21	20	34	1.97
17696--17746	19	2.7	19	96	0	93	25	25	25	23	2.00
18889--19010	31	3.9	30	76	9	111	30	17	20	31	1.95
19002--19073	30	2.4	30	92	0	117	23	19	26	30	1.98
24714--24862	18	7.9	18	78	8	163	27	28	22	21	1.99
24713--24863	38	4.0	38	94	0	257	27	28	22	21	1.99
24966--25020	21	2.7	20	80	11	58	36	18	3	41	1.68
25428--25548	63	1.9	63	91	0	197	22	20	22	34	1.97
25557--25632	21	3.6	21	98	0	143	27	15	23	32	1.95
27141--27199	29	2.0	29	96	0	109	23	11	13	50	1.74
28750--28797	23	2.0	25	92	8	82	4	54	8	33	1.50
29682--29725	5	8.8	5	92	0	70	2	40	36	20	1.65
29727--30064	6	56.7	6	97	1	608	15	18	49	17	1.80
30338--30392	22	2.5	22	78	0	65	29	7	23	40	1.81
33824--33864	22	2.0	21	85	9	57	31	21	19	26	1.97
34134--34176	17	2.4	18	80	7	52	30	20	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38144--38174	12	2.6	12	94	0	53	29	19	0	51	1.47
39172--39209	20	1.9	20	89	10	60	31	21	26	21	1.98
39958--40142	61	3.0	62	78	13	193	29	22	20	27	1.98
40114--40162	19	2.6	19	84	9	57	24	28	20	26	1.99
39987--40162	64	2.8	63	81	12	200	27	23	21	27	1.99
47055--47116	23	2.9	21	85	7	81	20	35	25	17	1.95
47505--47553	24	2.0	24	88	7	73	57	4	4	34	1.37
53693--53731	20	2.0	20	90	10	62	43	20	0	35	1.52
54378--54960	22	26.5	22	85	3	762	47	9	0	42	1.41
54394--54965	44	13.0	44	92	1	884	46	9	0	42	1.40
57927--57981	21	2.6	20	75	11	56	56	12	1	29	1.47
59799--59842	16	2.6	18	85	10	65	38	11	15	34	1.84
64315--64376	26	2.4	26	100	0	124	53	3	0	43	1.17
66164--66221	31	1.9	30	86	10	82	31	13	10	44	1.78
66920--66964	21	2.1	21	91	0	72	20	15	46	17	1.84
71013--71041	15	1.9	15	100	0	58	34	6	0	58	1.25
71365--71416	20	2.6	20	84	0	77	17	13	26	42	1.86
73133--73198	31	2.1	31	88	5	98	34	18	19	27	1.95
77659--77705	21	2.2	21	92	7	78	19	8	51	21	1.73
88386--88442	25	2.3	25	96	0	105	43	21	15	19	1.87
98921--99059	37	3.8	37	89	7	196	35	3	11	49	1.56
98921--99059	73	1.9	74	86	10	205	35	3	11	49	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98934--99076	37	3.9	36	90	4	191	34	3	13	48	1.60
98934--99076	73	2.0	72	84	6	191	34	3	13	48	1.60
105898--105973	23	3.3	23	94	0	125	36	6	19	36	1.78
106010--106059	23	2.2	23	81	0	55	40	12	14	34	1.82
106026--106069	23	1.9	23	90	0	70	38	9	18	34	1.82
105932--106249	87	3.7	87	93	0	537	41	11	14	31	1.82
106106--106156	23	2.2	23	89	0	75	37	9	19	33	1.85
106184--106243	23	2.6	23	81	0	66	41	11	16	30	1.84
106485--106536	24	2.2	24	77	16	56	53	5	0	40	1.25
106545--106589	14	3.1	14	81	15	56	42	0	2	55	1.12
106568--106657	28	3.3	28	72	7	78	50	1	1	47	1.15
106597--106662	30	2.2	31	83	8	82	48	0	1	50	1.10
107152--107186	14	2.5	14	85	0	52	65	0	0	34	0.93
107325--107414	28	3.3	28	72	7	78	51	1	0	47	1.08
107337--107422	30	2.8	31	80	16	83	51	1	0	47	1.08
107363--107459	40	2.4	42	81	10	112	50	0	0	49	1.00
107354--107459	37	3.1	32	76	17	90	50	0	0	50	1.00
107684--107736	21	2.5	21	90	0	88	43	9	9	37	1.70
107705--108177	198	2.4	199	89	2	729	39	14	14	31	1.86
108216--108272	23	2.4	23	73	2	60	35	17	12	35	1.87
108225--108413	87	2.2	87	89	2	283	32	15	10	41	1.80
108309--108353	23	2.0	23	90	0	72	40	20	6	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108731--108777	24	2.0	24	100	0	94	27	38	0	34	1.57
112179--112206	2	14.0	2	100	0	56	50	0	50	0	1.00
112892--112985	46	2.0	46	100	0	188	38	13	20	27	1.90
113358--113399	22	2.0	21	90	4	66	23	0	7	69	1.13
113763--113798	18	2.0	18	100	0	72	38	0	22	38	1.54
118810--118856	2	24.0	2	95	4	87	48	0	0	51	1.00
120554--120608	3	17.7	3	81	7	65	65	1	0	32	1.03
120549--120606	28	2.1	28	83	6	73	65	3	1	29	1.19
121379--121416	19	2.0	19	85	10	51	42	0	2	55	1.14
121507--121658	38	3.9	38	83	10	191	46	3	6	43	1.46
121514--121642	40	3.2	38	89	8	170	48	3	6	41	1.46
121594--121720	64	2.0	64	83	11	165	44	3	7	44	1.49
121657--121752	39	2.5	39	88	3	133	44	2	7	45	1.43
121903--122032	38	3.4	38	85	6	165	44	0	6	48	1.33
121905--122030	36	3.4	35	86	8	153	44	0	6	48	1.33
122014--122053	2	20.5	2	94	5	73	50	0	0	50	1.00
122036--122121	41	2.1	40	83	12	104	43	2	8	46	1.46
123221--123287	17	4.3	16	66	21	52	64	25	2	7	1.34
124792--124850	21	2.9	21	80	5	68	49	0	1	49	1.11
124794--124889	42	2.4	40	84	10	124	52	1	2	44	1.19
124875--124904	15	2.1	15	93	6	53	53	0	0	46	1.00
142455--142564	50	2.2	50	98	0	211	56	8	21	13	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143080--143149	21	3.3	21	73	25	67	21	18	24	35	1.95
143078--143170	42	2.2	42	90	3	143	22	19	21	36	1.95
143099--143258	63	2.6	61	94	2	257	22	18	20	38	1.93
143099--143254	21	7.4	21	77	11	158	22	18	19	39	1.93
144697--144747	23	2.2	23	86	6	68	33	9	5	50	1.59
152741--152775	11	3.3	11	92	4	54	31	0	22	45	1.53
152758--156958	6	717.2	6	87	9	5753	16	0	32	49	1.51
153056--156872	8	472.2	8	67	8	933	16	0	33	50	1.48
156396--156514	4	30.8	4	69	9	59	26	0	21	51	1.53
156885--156951	11	6.0	11	71	20	50	29	2	20	46	1.66
156875--156914	13	3.1	13	88	0	53	32	2	15	50	1.57

Tables:   1

The End!