Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005469.1 Hibiscus syriacus cultivar Beakdansim tig00012527_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45446

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3089--3224
60
2.3
60
79
5
150
33
17
18
30
1.94
5965--6024
22
2.6
23
75
21
63
38
3
1
56
1.26
6772--6832
32
1.9
32
86
0
86
39
8
14
37
1.76
6772--6819
16
3.0
16
96
0
87
37
6
16
39
1.74
9452--9502
10
5.1
10
85
0
75
58
19
11
9
1.60
17394--17422
2
14.5
2
100
0
58
51
0
0
48
1.00
18218--18255
20
1.9
20
88
0
58
23
28
15
31
1.96
19452--19498
2
23.5
2
86
0
67
46
2
4
46
1.34
22407--22563
65
2.4
66
82
5
185
28
19
20
31
1.97
25236--25267
15
2.1
15
100
0
64
50
6
21
21
1.71
27986--28046
18
3.4
17
74
17
61
32
26
18
22
1.97
34845--34906
18
3.1
20
77
17
67
30
24
22
22
1.99
34829--34906
39
2.0
39
92
5
131
29
26
21
21
1.99
35819--35867
22
2.2
23
82
10
57
34
18
4
42
1.69
42407--42453
24
2.0
24
86
0
67
53
6
14
25
1.65
42255--42603
161
2.2
162
87
5
501
40
9
13
36
1.76
43069--43626
203
2.8
202
80
7
600
37
10
12
39
1.78
43470--43913
159
2.8
162
77
11
461
39
10
11
38
1.76
43925--44020
43
2.2
43
84
0
129
33
10
11
44
1.75
44129--44229
40
2.4
41
80
9
116
37
11
7
42
1.71

Tables:   1

The End!