Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005482.1 Hibiscus syriacus cultivar Beakdansim tig00012568_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43218

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7915--7948
16
2.1
16
88
0
50
76
0
0
23
0.79
10442--10498
10
6.0
9
76
15
53
42
0
0
57
0.98
10448--10612
31
5.5
31
70
18
86
43
0
1
54
1.12
10456--10500
19
2.2
20
84
15
56
42
0
0
57
0.98
10441--10612
30
5.9
29
72
17
99
44
0
1
54
1.12
10512--10614
30
3.5
29
79
13
113
41
0
1
56
1.10
10469--10614
29
5.0
29
70
14
104
44
0
1
53
1.14
10619--10663
23
2.0
23
90
0
72
53
2
0
44
1.13
10765--10832
27
2.5
28
82
17
81
50
0
1
48
1.10
13901--13980
30
2.7
29
78
7
88
45
12
10
32
1.75
15532--15688
78
2.0
78
97
2
298
38
11
15
35
1.83
18016--18127
35
3.2
35
84
0
143
41
21
0
36
1.60
18123--18197
35
2.1
35
80
4
80
36
0
20
44
1.52
22480--22507
11
2.5
11
100
0
56
46
0
0
53
1.00
24693--24722
14
2.1
14
100
0
60
33
23
6
36
1.81
25101--25170
20
3.5
20
90
0
104
48
11
18
21
1.79
25092--25178
40
2.2
40
85
6
115
44
11
18
25
1.83
36077--36128
2
26.5
2
88
3
79
46
0
1
51
1.12
36144--36185
21
2.0
21
90
9
68
47
0
0
52
1.00
36147--36276
41
3.1
40
73
16
113
49
3
1
46
1.27
36140--36257
20
5.6
21
68
17
68
47
2
1
48
1.25
36151--36272
42
2.9
42
75
11
119
50
3
1
45
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36668--36701
17
2.0
17
88
0
50
35
29
11
23
1.90
38680--38722
22
2.0
22
86
9
61
55
0
13
30
1.39
41670--41733
33
2.0
32
82
14
78
43
6
7
42
1.58

Tables:   1

The End!