Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005484.1 Hibiscus syriacus cultivar Beakdansim tig00012591_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72872

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
760--801
14
2.6
16
78
21
52
42
30
0
26
1.55
773--807
14
2.5
14
95
0
61
40
28
0
31
1.57
8187--9762
525
3.0
525
97
0
2938
36
18
10
34
1.86
12165--12213
21
2.4
20
83
10
55
55
2
0
42
1.11
12196--12271
25
3.0
24
80
14
75
53
0
5
40
1.23
12212--12284
25
3.0
24
84
8
85
52
0
5
42
1.24
15516--15557
20
2.1
20
100
0
84
28
9
21
40
1.84
18593--18636
22
2.0
22
82
8
54
25
4
11
59
1.51
19649--19691
21
2.1
20
83
12
52
58
0
2
39
1.11
23147--23223
31
2.5
31
80
4
93
31
12
7
48
1.70
25641--25685
21
2.1
21
88
8
65
37
8
0
53
1.32
30645--30682
19
2.0
20
89
5
60
31
15
26
26
1.96
30650--30808
63
2.5
62
84
2
183
32
18
21
27
1.97
32185--32499
149
2.1
148
94
2
549
28
15
20
35
1.93
36052--36111
20
3.0
21
82
4
70
33
25
18
23
1.97
36111--36173
25
2.9
22
78
19
69
31
6
30
31
1.83
36147--36183
19
1.9
19
100
0
74
37
5
29
27
1.79
36594--36914
21
15.8
21
75
6
275
33
23
21
21
1.97
36594--37199
40
15.2
40
76
11
367
33
23
21
21
1.97
36594--37199
61
10.1
61
78
6
528
33
23
21
21
1.97
36883--36948
34
1.9
34
100
0
132
30
25
22
21
1.99
36917--37199
21
14.1
21
73
9
223
33
22
21
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36862--37033
55
3.0
55
85
5
209
30
25
23
21
1.99
37431--37457
14
1.9
14
100
0
54
22
11
0
66
1.22
41201--41355
60
2.6
59
80
7
161
30
20
6
41
1.77
43295--43354
31
1.9
31
93
0
102
26
8
16
48
1.75
59647--59706
26
2.4
25
83
8
68
48
1
0
50
1.11
64074--64348
91
3.0
89
92
2
433
28
14
13
44
1.83
64465--65112
198
3.3
199
87
3
887
38
15
15
30
1.89
65312--65348
16
2.3
16
95
0
65
35
21
8
35
1.83
65495--65542
19
2.6
19
96
3
89
25
0
4
70
1.04
66842--66897
24
2.3
24
96
0
103
30
17
14
37
1.90

Tables:   1

The End!