genome.fa.s5497.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005497.1 Hibiscus syriacus cultivar Beakdansim tig00012650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156378

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13160--13197	17	2.2	17	86	9	51	7	28	2	60	1.38
19622--19685	30	2.2	30	97	2	121	31	9	21	37	1.85
25139--25249	55	2.0	55	92	0	186	39	13	23	23	1.90
39497--39577	42	1.9	42	89	0	126	48	7	6	38	1.56
39563--39615	2	26.5	2	100	0	106	49	0	0	50	1.00
51882--51939	20	2.8	20	72	15	55	51	5	5	37	1.46
52781--52828	23	2.1	23	96	0	87	50	16	27	6	1.69
55661--55698	14	2.7	14	87	0	58	23	39	28	7	1.83
55754--55830	29	2.7	29	95	0	136	24	27	33	14	1.94
57439--57464	13	2.0	13	100	0	52	7	61	30	0	1.24
57725--57756	14	2.2	15	94	5	57	0	15	12	71	1.14
58261--58361	3	33.0	3	86	4	139	61	0	0	37	1.03
58487--59208	76	9.5	76	97	0	1327	35	20	20	22	1.96
58487--59208	306	2.4	305	97	0	1365	35	20	20	22	1.96
59719--59773	22	2.5	22	90	0	92	41	12	10	34	1.78
62618--62843	83	2.7	82	93	1	380	38	23	12	24	1.90
69597--69647	18	2.9	17	75	16	50	72	1	0	25	0.95
70349--70467	53	2.2	53	82	5	132	62	5	5	27	1.37
71018--71043	13	2.0	13	100	0	52	7	61	30	0	1.24
71304--71335	14	2.2	15	94	5	57	0	15	12	71	1.14
71839--71942	3	34.0	3	86	3	145	61	0	0	37	1.03
73754--73815	31	2.2	27	81	16	72	32	29	20	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77861--77896	17	2.1	17	94	0	63	50	13	5	30	1.65
78184--78293	31	3.5	31	92	4	186	38	21	20	20	1.94
79097--79141	21	2.1	21	87	0	63	15	24	28	31	1.96
82028--82063	17	2.1	17	94	0	63	50	13	5	30	1.65
82351--82429	31	2.5	31	95	0	140	39	21	20	18	1.93
83229--83273	21	2.1	21	87	0	63	15	24	28	31	1.96
87603--87645	18	2.4	18	96	0	77	48	23	2	25	1.62
88422--88454	16	2.1	16	94	0	57	60	3	6	30	1.36
88416--88449	16	2.0	17	88	11	52	61	0	5	32	1.20
92644--92690	14	3.1	15	78	9	51	25	2	6	65	1.27
96141--96187	13	3.7	13	77	5	51	68	12	2	17	1.31
96309--96349	21	2.0	21	95	0	73	21	41	9	26	1.84
96630--96692	33	1.9	33	83	6	83	23	20	41	14	1.89
98428--98479	9	6.1	9	76	13	56	59	1	1	36	1.19
98430--98486	16	3.5	16	88	4	78	59	1	1	36	1.18
99390--99450	20	3.1	19	82	13	70	57	11	13	18	1.65
99192--99664	181	2.6	182	88	0	678	42	12	17	27	1.85
99585--99631	20	2.4	19	82	10	67	53	10	17	19	1.72
99594--99636	20	2.3	19	88	11	63	51	11	16	20	1.75
100749--100813	21	3.1	21	90	0	94	41	9	30	18	1.82
100847--100912	33	2.0	33	90	0	105	28	0	48	22	1.51
102702--102750	19	2.6	19	96	0	89	32	2	10	55	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102863--103805	201	4.7	200	95	0	1661	35	15	18	30	1.92
102863--103805	401	2.3	401	95	0	1681	35	15	18	30	1.92
105331--105406	12	6.3	12	89	0	116	40	6	32	19	1.78
105344--105418	36	2.1	36	97	0	141	38	6	33	21	1.79
105331--105406	6	12.7	6	84	0	89	40	6	32	19	1.78
105348--105434	6	14.5	6	85	0	93	39	4	32	24	1.76
106642--107214	183	3.1	183	98	0	1110	34	14	16	34	1.90
110061--110133	23	3.2	23	84	0	92	35	5	20	38	1.76
110488--110531	22	2.0	22	86	4	63	40	9	9	40	1.68
110549--110621	23	3.2	22	84	7	92	36	5	17	39	1.73
109715--112489	488	5.7	488	95	0	4917	41	7	10	40	1.67
110975--111018	22	2.0	21	82	8	52	38	9	11	40	1.73
111036--111108	23	3.2	23	90	0	110	34	5	23	36	1.78
111525--111597	23	3.2	23	88	0	110	35	5	20	38	1.76
112014--112086	23	3.2	23	88	0	110	35	5	20	38	1.76
113307--113342	19	1.9	18	88	5	54	5	16	2	75	1.12
137666--137713	23	2.1	23	92	0	78	52	0	8	39	1.32
138231--138277	25	2.0	23	83	8	58	29	23	19	27	1.98
138946--138994	23	2.1	23	96	0	89	18	20	26	34	1.95
139016--139064	24	2.0	24	96	0	89	18	24	26	30	1.98
139586--139614	11	2.6	11	100	0	58	51	6	0	41	1.28
142565--142715	20	7.4	20	79	5	151	37	23	19	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142565--142714	40	3.7	39	85	9	169	38	24	18	19	1.93
143275--143365	20	4.6	20	84	9	114	50	18	17	13	1.78
143275--143402	19	6.8	19	77	12	86	49	21	17	11	1.78
143399--143444	19	2.4	19	85	0	56	15	21	17	45	1.85
143408--143445	19	2.0	19	89	0	58	13	26	15	44	1.83
143440--143495	20	2.8	20	84	10	78	16	25	19	39	1.91
146934--146967	14	2.4	14	95	0	59	35	0	20	44	1.52
147073--147171	19	5.7	18	67	26	54	46	21	19	13	1.83
147073--147164	33	2.8	32	86	3	121	45	21	18	14	1.84
147136--147181	19	2.4	19	92	0	74	47	23	15	13	1.80
147181--147274	33	2.8	33	93	0	161	14	24	18	42	1.88
147216--147327	53	2.1	52	90	1	170	16	21	18	43	1.87
147279--147313	14	2.5	14	95	0	61	14	20	20	45	1.85
147268--147361	33	2.8	33	78	3	107	14	21	22	41	1.89
147177--147368	86	2.2	86	85	1	251	15	22	19	41	1.89
149680--149706	3	9.0	3	100	0	54	0	33	0	66	0.92
149881--149934	24	2.2	24	93	0	90	40	20	18	20	1.91
149881--149948	24	2.8	24	84	0	64	38	20	17	23	1.93
150787--151046	20	12.9	19	75	11	155	20	18	23	36	1.95
150793--151023	40	5.7	40	87	4	279	19	19	23	37	1.94
150793--151004	60	3.5	60	80	5	241	18	18	24	38	1.93
152510--152562	7	8.2	6	80	17	54	69	0	1	28	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152510--152562	3	16.3	3	81	18	54	69	0	1	28	0.99
152517--152562	10	4.4	10	84	10	65	71	0	0	28	0.86
153023--153130	37	2.9	37	92	0	180	34	12	12	40	1.81
153810--153892	34	2.4	35	93	2	141	36	9	15	38	1.81
153880--154440	36	16.1	36	77	14	534	40	13	19	26	1.89
153945--154440	73	7.1	73	76	14	497	40	14	18	26	1.89
153945--154440	209	2.4	210	91	3	811	40	14	18	26	1.89
153974--154240	136	1.9	138	87	4	398	41	14	17	26	1.88
154328--154388	15	3.7	15	71	23	50	34	11	22	31	1.90
154189--154440	138	1.8	136	90	3	407	39	12	19	28	1.89
154343--154403	21	3.2	21	69	26	71	37	11	21	29	1.88
154173--154238	21	3.4	21	70	25	72	40	12	21	25	1.88
154340--154464	36	3.6	34	84	8	144	39	12	20	28	1.89

Tables:   1

The End!