genome.fa.s5506.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005506.1 Hibiscus syriacus cultivar Beakdansim tig00012696_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  200244

Tables:   1   2   

This is table  1  of  2  ( 178 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735--771	10	3.6	10	89	7	56	72	0	0	27	0.84
13020--13049	15	2.1	14	93	6	51	0	26	0	73	0.84
14274--14331	21	2.8	21	78	5	64	29	17	24	29	1.97
15511--15634	60	2.1	59	83	4	151	37	16	8	37	1.81
16890--16951	32	1.9	32	86	0	88	51	4	3	40	1.39
17754--17802	23	2.1	23	84	0	62	51	14	2	32	1.54
19460--19492	2	16.5	2	100	0	66	51	0	0	48	1.00
19506--19536	16	1.9	16	93	0	53	80	3	9	6	0.99
21199--22089	84	10.7	84	84	1	1038	23	17	25	33	1.97
21199--22094	333	2.7	333	83	2	1118	23	17	25	33	1.97
21202--22089	417	2.1	417	84	2	1156	23	17	25	33	1.97
26936--26969	3	11.7	3	90	6	52	73	0	0	26	0.83
26915--26960	14	3.2	14	81	3	56	73	0	4	21	1.00
26987--27038	16	3.3	15	82	15	61	80	1	9	7	0.97
27272--27325	26	2.1	26	100	0	108	33	40	14	11	1.82
31522--31566	21	2.1	21	83	0	54	44	17	4	33	1.69
32423--32490	20	3.4	20	85	0	91	42	8	22	26	1.82
34912--34984	2	36.5	2	100	0	146	49	0	0	50	1.00
35421--35480	23	2.6	23	83	0	75	51	16	8	23	1.71
35515--35725	41	5.8	37	66	24	117	57	14	6	21	1.59
35480--35739	71	3.6	71	89	0	385	58	15	6	20	1.58
35552--35663	30	3.4	30	67	23	89	58	16	5	19	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38461--38511	3	16.3	3	84	8	57	60	1	0	37	1.08
38670--39074	76	5.3	76	94	0	686	35	21	20	21	1.96
39017--39120	45	2.3	45	91	0	172	33	20	22	24	1.97
38931--39195	121	2.2	121	91	2	433	34	21	21	22	1.97
38865--39271	197	2.1	196	94	0	715	34	21	21	22	1.96
38789--39601	273	3.0	273	93	2	1362	35	20	20	23	1.96
39054--39348	75	3.9	76	93	2	479	34	21	21	23	1.96
39290--39393	45	2.3	45	96	0	190	34	19	23	23	1.96
39203--39472	122	2.2	123	93	2	452	34	19	21	24	1.97
39327--39601	76	3.6	75	88	4	401	36	20	19	23	1.95
40450--40529	22	3.6	22	72	0	79	40	12	12	35	1.81
40881--40992	54	2.1	54	89	0	170	22	23	16	38	1.93
43138--43455	115	2.8	115	93	0	523	33	21	14	30	1.93
43358--43549	93	2.1	92	90	3	296	36	20	14	28	1.92
43241--43756	207	2.5	207	95	1	921	35	21	13	29	1.92
43450--43662	114	1.9	114	90	3	340	34	21	14	29	1.93
43565--43845	94	3.0	93	90	3	424	36	20	13	29	1.91
44025--44070	23	2.0	23	100	0	92	8	34	17	39	1.80
52929--52988	3	19.3	3	86	6	75	61	1	0	36	1.06
56684--56978	90	3.3	91	96	1	531	35	21	18	23	1.96
57066--57403	43	7.3	43	72	16	255	29	28	12	29	1.93
57013--57254	98	2.5	98	91	2	380	29	28	12	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57066--57403	141	2.4	141	88	3	500	29	28	12	29	1.93
57434--57645	36	5.8	36	87	1	280	35	14	23	26	1.93
57530--57626	21	5.2	21	61	27	65	37	12	25	24	1.91
57596--57696	51	2.0	51	94	0	175	36	12	25	24	1.91
57632--57660	15	1.9	15	100	0	58	27	13	34	24	1.93
57636--58387	36	20.7	36	79	9	746	35	14	24	25	1.93
57830--57899	21	3.6	21	67	21	62	32	14	25	27	1.94
57928--57968	15	2.7	15	92	0	64	31	19	29	19	1.96
57892--58008	51	2.2	53	86	6	157	33	16	24	25	1.96
57424--58239	271	2.9	270	86	5	1023	35	13	23	26	1.93
58019--58056	15	2.5	15	95	0	67	31	21	28	18	1.97
57986--58088	51	2.0	51	90	0	161	35	15	24	24	1.94
58157--58257	21	5.4	21	65	26	82	36	12	25	24	1.91
58371--58402	15	2.1	15	94	0	55	31	21	28	18	1.97
58392--58456	21	3.4	21	64	24	61	36	13	26	23	1.92
58389--58471	36	2.3	36	97	0	157	34	15	26	22	1.94
58449--58486	15	2.5	15	100	0	76	34	18	28	18	1.95
58820--58918	34	2.9	34	89	0	144	36	10	17	36	1.83
59016--59246	32	7.2	32	89	1	318	33	22	13	30	1.93
60585--60627	21	2.0	21	81	0	50	30	25	25	18	1.98
60652--60692	20	2.0	20	85	0	55	31	31	26	9	1.89
61174--61391	103	2.1	103	97	0	409	25	12	24	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61407--61459	23	2.3	23	76	0	61	24	26	24	24	2.00
67038--67065	10	2.8	10	100	0	56	7	21	0	71	1.09
68106--68322	103	2.1	103	96	0	398	24	13	24	36	1.92
68339--68391	23	2.3	23	80	0	61	22	28	24	24	2.00
69319--69391	21	3.2	22	79	11	67	8	13	0	78	0.97
69334--69368	18	2.0	18	88	5	54	2	14	0	82	0.77
69319--69399	11	7.5	11	76	15	71	8	12	0	79	0.95
70583--70619	19	1.9	19	88	0	56	45	16	18	18	1.85
76275--76338	26	2.6	25	73	24	64	59	1	1	37	1.16
76994--77052	29	2.0	30	83	6	77	77	5	3	13	1.05
95173--95248	30	2.6	29	89	8	118	19	31	5	43	1.73
95969--96278	70	4.5	67	75	7	221	30	23	23	23	1.99
96027--96278	70	3.6	69	75	9	226	30	23	24	22	1.99
95985--96278	137	2.1	138	80	5	335	30	23	23	22	1.99
102819--102847	15	2.0	15	93	6	51	68	0	10	20	1.18
104934--104981	21	2.3	21	77	0	60	27	20	16	35	1.94
104996--105037	20	2.1	20	90	0	66	28	28	14	28	1.95
105207--105264	22	2.6	22	80	0	80	17	41	18	22	1.90
105613--105639	14	1.9	14	100	0	54	7	22	22	48	1.75
105620--105697	20	4.0	20	86	3	104	11	15	20	52	1.73
105628--105697	20	3.5	20	88	1	106	11	14	22	51	1.74
105661--105704	20	2.2	20	91	0	70	11	13	20	54	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107613--107661	20	2.5	20	96	0	89	36	26	22	14	1.92
107743--107790	20	2.4	20	92	0	78	14	14	27	43	1.84
107777--107820	20	2.2	20	95	0	79	13	13	22	50	1.77
108300--108403	21	5.0	21	78	3	102	21	34	20	24	1.96
108296--108418	42	2.9	42	80	2	131	21	35	19	22	1.96
108349--108418	21	3.3	21	74	4	61	22	35	21	20	1.96
109803--109837	14	2.5	14	100	0	70	31	0	20	48	1.50
109964--110029	20	3.3	20	85	4	71	48	22	12	16	1.79
109979--110029	20	2.5	20	93	0	84	50	21	13	13	1.76
110061--110157	20	4.8	20	93	0	158	27	20	20	30	1.98
110483--110511	12	2.4	12	100	0	58	17	13	13	55	1.70
110892--110940	24	2.0	25	84	4	64	28	20	8	42	1.80
112766--112819	24	2.2	24	93	0	90	40	20	18	20	1.91
112766--112833	24	2.8	24	84	0	64	38	20	17	23	1.93
113641--113748	20	5.3	20	78	6	119	26	17	25	29	1.98
113638--113768	61	2.2	61	83	4	149	26	18	24	30	1.98
113844--113889	19	2.4	19	85	3	56	21	17	32	28	1.96
114054--114091	18	2.1	18	85	9	51	34	0	5	60	1.19
116276--116312	2	18.5	2	100	0	74	48	0	0	51	1.00
118021--118084	30	2.2	30	77	8	69	15	15	7	60	1.56
118623--118674	6	8.7	6	91	0	68	1	23	0	75	0.91
118617--118674	18	3.2	18	82	2	71	3	24	0	72	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121617--121662	23	2.0	23	95	0	83	43	28	0	28	1.55
122940--122976	19	2.1	18	90	10	58	43	8	5	43	1.57
123711--123739	14	2.1	14	100	0	58	44	6	27	20	1.77
124516--124556	21	2.0	21	90	0	64	7	12	0	80	0.90
124520--124563	18	2.5	17	86	13	63	4	13	0	81	0.83
125224--125278	5	10.8	5	80	20	53	1	16	0	81	0.77
125233--125273	13	3.2	13	80	19	50	0	17	0	82	0.66
125230--125278	24	2.0	24	88	7	73	0	16	0	83	0.64
125224--125283	30	2.0	31	87	9	88	3	16	0	80	0.85
125236--125284	12	4.0	12	79	12	55	2	20	0	77	0.87

Tables:   1   2