genome.fa.s5506.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005506.1 Hibiscus syriacus cultivar Beakdansim tig00012696_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  200244

Tables:   1   2   

This is table  2  of  2  ( 178 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128780--128822	16	2.6	17	85	10	63	65	0	16	18	1.28
137854--137886	11	3.0	11	90	0	57	42	21	9	27	1.83
138207--138235	14	2.1	14	100	0	58	20	0	0	79	0.74
138383--138420	19	2.1	18	85	9	51	44	7	2	44	1.47
139439--139486	21	2.3	21	88	0	69	60	6	8	25	1.49
139563--140075	254	2.0	255	87	3	737	29	13	20	37	1.90
142859--142914	28	2.0	29	85	3	78	69	7	3	19	1.27
143608--143654	24	2.0	24	87	8	69	51	0	4	44	1.21
146256--146308	21	2.5	21	81	6	72	20	26	18	33	1.96
146298--146349	21	2.5	21	87	3	70	38	17	23	21	1.93
146283--146514	41	5.7	41	70	7	105	33	18	19	28	1.96
146369--146421	20	2.6	21	75	6	54	22	16	15	45	1.85
146423--146532	20	5.4	20	81	4	123	38	19	20	21	1.94
148932--149001	20	3.5	20	90	0	77	30	18	25	25	1.98
148952--149017	20	3.3	20	95	0	114	27	18	30	24	1.98
149028--149079	20	2.5	20	87	3	68	38	17	23	21	1.93
149028--149079	21	2.5	21	87	3	70	38	17	23	21	1.93
149068--149177	20	5.4	20	84	6	96	30	27	18	23	1.97
149110--149186	20	3.8	20	92	0	127	24	28	19	27	1.99
149409--149462	20	2.7	20	91	0	90	38	22	22	16	1.93
149407--149479	20	3.7	20	79	3	76	39	20	21	17	1.92
149488--149532	19	2.4	19	84	0	54	20	22	17	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149498--149536	19	2.1	19	95	0	69	17	23	12	46	1.83
151101--151188	42	2.1	42	91	2	142	20	13	42	23	1.88
151128--151188	21	2.9	21	73	9	70	21	13	42	22	1.87
151531--151569	20	2.0	20	94	0	69	33	28	12	25	1.93
151537--151624	20	4.4	20	88	0	95	32	26	22	18	1.97
151557--151624	20	3.4	20	91	0	100	32	25	26	16	1.96
151620--151684	33	2.0	33	87	6	96	50	26	13	9	1.71
151683--151746	19	3.6	19	72	20	66	14	20	20	45	1.85
151731--151785	20	2.8	19	83	8	65	16	23	23	36	1.94
153675--153733	20	3.0	20	87	0	73	44	22	18	15	1.87
154206--154343	41	3.4	41	83	2	188	21	16	25	36	1.94
154226--154339	20	5.7	20	81	6	131	21	17	27	33	1.96
154329--154380	20	2.5	20	84	3	59	19	23	19	38	1.93
154226--154360	41	3.3	40	85	3	155	22	18	25	34	1.96
154370--154422	21	2.5	22	81	6	74	33	18	26	20	1.96
156063--156181	52	2.3	50	81	9	132	41	4	3	51	1.38
156097--156144	20	2.3	20	86	10	62	45	4	0	50	1.21
163627--163874	124	2.0	124	94	0	435	41	14	7	37	1.73
166450--166595	30	4.7	30	76	9	114	29	26	15	28	1.96
168458--168497	18	2.3	17	87	12	55	22	35	7	35	1.82
168808--168862	25	2.2	26	96	3	103	23	7	7	61	1.47
171686--171751	14	5.0	14	83	14	95	13	13	15	57	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171673--171740	24	2.8	24	90	4	109	16	13	14	55	1.69
171999--172075	10	7.5	10	73	11	66	10	7	18	63	1.49
178631--178669	21	1.9	20	84	5	51	12	0	17	69	1.19
180615--180659	20	2.3	19	84	3	54	40	24	0	35	1.56
189759--190220	179	2.6	181	89	1	694	41	13	16	27	1.86
190152--190192	20	2.2	19	83	12	50	51	14	17	17	1.77
192311--192375	21	3.1	21	84	8	87	41	12	29	16	1.85
194268--194316	19	2.6	19	96	0	89	32	2	10	55	1.45
194548--195504	200	4.8	200	93	1	1606	35	14	18	30	1.91
197001--197046	12	3.8	12	85	0	56	39	6	32	21	1.79
197001--197046	18	2.6	18	85	0	56	39	6	32	21	1.79
198324--198562	116	2.1	117	92	3	394	32	14	15	37	1.88
198623--198858	119	2.0	117	91	1	382	31	13	14	39	1.85
198261--199026	300	2.6	298	95	3	1375	33	15	16	34	1.90

Tables:   1   2

The End!