genome.fa.s5511.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005511.1 Hibiscus syriacus cultivar Beakdansim tig00012723_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39647

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3498--3553	24	2.3	24	93	0	94	1	21	28	48	1.60
3887--3931	21	2.1	21	83	4	54	77	4	4	13	1.07
4095--4143	2	24.0	2	87	4	71	46	0	6	46	1.27
10110--10142	13	2.5	13	95	0	57	48	3	0	48	1.17
14898--15349	180	2.7	161	82	7	465	43	13	16	26	1.85
15090--15136	20	2.4	19	86	10	67	55	8	17	19	1.67
15270--15316	20	2.4	19	79	10	58	53	8	17	21	1.70
17528--17594	21	3.1	21	85	8	89	40	10	29	19	1.85
19489--19537	19	2.6	19	96	0	89	32	2	10	55	1.45
19650--20433	200	3.9	200	94	1	1329	35	15	18	31	1.91
19650--20414	401	1.9	400	93	0	1334	35	15	18	30	1.91
21910--22009	12	8.3	12	84	3	103	41	8	30	21	1.81
21910--22009	6	16.7	6	76	8	69	41	8	30	21	1.81
21910--21985	36	2.1	36	90	0	116	43	9	28	18	1.81
21976--22013	9	4.2	9	93	0	58	36	2	31	28	1.71
23223--23800	183	3.2	183	95	0	1030	34	14	16	33	1.90
26595--26657	23	2.7	23	92	0	99	39	3	19	38	1.67
26603--26667	23	2.8	23	90	0	94	36	4	18	40	1.71
27032--27104	23	3.2	23	90	0	101	36	4	19	39	1.71
26333--27210	437	2.0	438	95	2	1577	42	7	10	39	1.67
30146--30183	12	2.9	13	80	11	51	55	0	5	39	1.23
35847--35886	18	2.2	18	95	0	71	27	35	20	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36380--37860	81	18.5	80	80	5	1390	36	23	20	18	1.95
36380--37860	161	9.3	160	82	6	1411	36	23	20	18	1.95

Tables:   1

The End!