genome.fa.s556.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000556.1 Hibiscus syriacus cultivar Beakdansim tig00001086_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  359109

Tables:   1   2   

This is table  1  of  2  ( 140 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6110--6157	26	2.0	23	84	12	60	52	2	0	45	1.12
6348--6394	22	2.1	22	88	7	69	51	6	2	40	1.39
8182--8299	62	1.9	62	85	0	164	41	11	22	25	1.86
20657--20689	12	2.9	12	86	13	52	78	0	0	21	0.75
20855--20894	20	2.0	20	85	9	55	52	0	0	47	1.00
28647--28699	21	2.5	21	93	0	88	28	28	22	20	1.99
28895--28949	13	4.2	13	75	13	58	49	12	3	34	1.59
28935--29032	33	3.0	32	91	5	153	44	15	7	32	1.73
31353--31398	12	3.6	12	81	16	56	17	19	17	45	1.85
31352--31391	15	2.9	14	85	14	57	20	17	15	47	1.83
33225--33262	20	2.0	20	85	10	53	36	0	0	63	0.95
37961--38045	36	2.4	36	93	0	143	24	20	28	27	1.99
42271--42414	60	2.4	60	81	3	166	39	7	22	30	1.82
42314--42437	60	2.1	59	86	4	169	37	6	25	30	1.81
43420--43451	6	5.3	6	100	0	64	0	15	15	68	1.21
46222--46316	21	4.6	21	69	8	52	33	27	17	21	1.96
46304--46395	40	2.3	40	100	0	184	43	26	18	11	1.84
46304--46532	20	11.4	20	76	7	160	40	25	16	17	1.90
46342--46532	60	3.2	60	77	7	183	39	25	16	18	1.91
47224--47270	24	2.0	24	87	8	69	25	14	21	38	1.92
47445--47469	12	2.1	12	100	0	50	72	0	28	0	0.86
49767--49975	19	11.7	19	78	18	243	45	17	22	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49767--49975	72	2.9	72	86	7	284	45	17	22	14	1.85
49753--49969	52	4.1	52	87	11	302	46	17	22	13	1.83
49965--50081	53	2.2	53	98	1	227	13	23	17	44	1.85
49984--50081	19	5.4	19	84	13	143	14	22	17	45	1.84
50188--50224	14	2.6	14	91	0	65	45	21	0	32	1.52
52145--52317	19	9.6	19	77	12	150	45	23	20	10	1.82
52239--52295	14	3.7	14	75	20	51	43	22	22	10	1.84
52220--52312	33	2.8	33	93	0	159	46	20	21	11	1.82
52313--52371	19	3.4	19	77	22	83	6	15	30	47	1.71
52329--52387	14	3.9	14	74	20	55	6	18	27	47	1.74
52313--52403	33	2.7	33	91	1	137	8	16	28	46	1.77
52451--52723	93	3.1	87	89	6	315	45	19	13	22	1.85
52574--52606	17	1.9	17	88	11	50	45	15	15	24	1.84
52501--52723	93	2.4	93	97	0	428	45	18	13	22	1.84
54410--54506	20	5.2	20	72	18	100	46	17	24	11	1.81
54408--54472	21	3.1	21	82	4	96	47	15	26	10	1.78
54457--54513	14	3.7	14	75	20	60	43	22	24	8	1.81
54408--54529	33	3.5	33	89	8	163	45	18	24	10	1.81
54547--54603	14	3.7	14	75	20	60	8	24	22	43	1.81
54542--54610	33	2.1	33	100	0	138	8	23	20	47	1.77
54591--54664	21	3.5	21	76	7	87	14	21	16	47	1.82
54744--54814	33	2.2	33	94	0	124	47	16	23	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55005--55064	22	2.7	22	100	0	120	26	13	45	15	1.83
55216--55388	20	8.6	20	82	6	197	17	19	27	35	1.94
56003--56078	35	2.2	35	92	0	125	39	23	1	35	1.63
56475--56722	130	1.9	130	92	0	415	36	15	12	35	1.85
56489--56753	130	2.0	129	81	4	300	40	13	12	33	1.83
57049--57111	28	2.3	27	78	13	65	47	1	1	49	1.20
62022--62091	24	3.1	23	66	26	60	54	25	1	18	1.52
62007--62091	43	2.0	43	95	0	152	54	27	1	17	1.51
63082--63215	60	2.2	60	89	2	198	32	20	15	31	1.94
63432--63544	60	1.9	60	81	0	136	37	15	14	33	1.87
63613--63701	31	2.9	31	77	9	92	43	4	7	43	1.53
76261--76295	13	2.7	13	100	0	70	51	0	48	0	1.00
90514--90594	24	3.4	24	64	0	63	49	9	20	19	1.77
90503--90667	48	3.4	48	89	7	228	44	8	23	23	1.80
93451--93484	16	2.1	16	88	0	50	50	0	2	47	1.16
93526--93559	16	2.0	18	88	11	54	26	2	5	64	1.30
94029--94276	130	1.9	130	91	0	406	35	13	15	35	1.86
94673--94748	35	2.2	35	90	0	116	35	1	22	40	1.62
98521--98662	50	2.8	50	100	0	284	42	3	14	38	1.63
102309--102358	25	2.0	26	84	4	66	24	24	42	10	1.85
102456--102532	25	3.1	25	90	0	127	29	14	19	36	1.91
102614--102660	3	16.0	3	87	12	71	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102898--103223	46	7.5	45	72	16	258	25	19	29	24	1.98
102859--103241	129	3.0	129	98	0	723	24	19	30	25	1.98
103636--103795	64	2.5	64	78	5	173	42	15	13	28	1.85
103801--103845	15	3.0	15	86	0	63	42	4	22	31	1.73
104285--104596	67	4.8	65	88	4	409	43	13	12	30	1.81
104421--104542	37	3.5	37	72	17	134	42	13	12	31	1.82
104950--104977	14	2.0	14	100	0	56	21	0	28	50	1.49
106115--106165	21	2.3	22	80	10	59	3	27	3	64	1.28
109199--109260	32	2.0	32	96	3	117	61	9	14	14	1.57
112591--112643	25	2.0	27	82	7	65	22	24	43	9	1.83
112741--112817	25	3.1	25	94	0	136	28	14	19	37	1.91
112899--112945	3	16.0	3	87	12	71	68	0	0	31	0.90
116249--116302	20	2.6	21	83	16	69	55	1	0	42	1.10
118076--118123	17	3.0	15	77	14	51	56	27	2	14	1.50
127191--127232	15	2.7	16	82	17	61	33	0	7	59	1.25
129869--129947	32	2.4	32	85	8	97	13	10	30	45	1.77
130094--130119	5	5.2	5	100	0	52	0	19	57	23	1.40
131746--131826	40	2.0	40	86	9	112	53	4	2	39	1.36
134291--134380	39	2.3	39	80	3	101	27	2	26	43	1.67
150842--150916	29	2.6	29	100	0	150	46	4	14	34	1.63
150961--151312	173	2.0	175	88	4	528	38	12	14	34	1.84
153354--153381	8	3.5	8	100	0	56	28	35	10	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158433--158546	35	3.3	34	82	4	129	42	18	0	37	1.56
163872--163925	24	2.3	23	80	3	63	46	1	3	48	1.30
168575--168602	3	9.3	3	100	0	56	67	32	0	0	0.91
184273--184311	20	1.9	21	84	5	53	38	2	2	56	1.27
197054--197160	42	2.6	42	80	1	126	25	22	22	29	1.99
196948--197338	214	1.8	214	93	1	676	34	14	18	32	1.91
197368--197459	41	2.2	41	85	11	118	22	17	23	35	1.95
197830--198079	53	4.7	53	93	1	387	32	21	25	20	1.98
212326--212439	33	3.5	33	92	0	183	20	49	8	21	1.76
214677--214743	31	2.2	31	83	5	82	31	2	16	49	1.61
215743--215826	37	2.3	38	87	6	120	33	4	19	42	1.72
218958--218994	18	2.1	18	94	0	65	32	0	40	27	1.57
220270--220355	37	2.3	37	86	5	120	37	2	17	43	1.62
244096--244124	15	1.9	15	100	0	58	34	0	48	17	1.47
244094--244141	15	3.2	15	84	0	51	33	8	41	16	1.78
255068--255139	37	1.9	38	94	5	130	16	31	30	20	1.95
256316--256350	17	1.9	19	88	11	56	37	2	8	51	1.47
260971--261043	37	2.0	36	92	7	121	16	31	32	19	1.94
261642--261691	15	3.3	15	100	0	100	14	24	34	28	1.93
262666--262712	13	3.5	13	82	11	51	29	27	4	38	1.76
264816--264889	37	2.0	38	91	2	123	43	2	10	43	1.53
265228--265581	176	2.0	176	98	0	690	50	14	14	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267691--267773	29	2.8	29	88	1	121	39	12	13	34	1.81
270406--270442	15	2.5	15	95	0	65	37	24	21	16	1.93
270400--270455	29	1.9	29	82	7	69	39	21	21	17	1.93
272717--272757	22	1.9	21	90	5	64	70	4	0	24	1.06
273446--273479	18	1.9	18	88	5	52	14	26	29	29	1.95
276931--276956	2	13.0	2	100	0	52	50	0	0	50	1.00
277706--277760	28	2.0	28	92	7	94	60	3	1	34	1.25
282552--282584	2	16.5	2	100	0	66	51	0	0	48	1.00
283488--283563	27	2.7	27	75	20	75	47	0	3	48	1.20
283488--283564	28	2.7	30	75	22	76	48	0	3	48	1.20

Tables:   1   2