genome.fa.s5561.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005561.1 Hibiscus syriacus cultivar Beakdansim tig00012899_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108585

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4705--4746	13	3.2	13	77	12	50	35	0	7	57	1.26
14256--14319	28	2.3	28	97	0	119	20	34	18	26	1.96
22068--22141	4	19.0	4	84	5	89	48	21	1	28	1.58
22240--22293	16	3.4	16	100	0	108	38	24	11	25	1.88
22240--22293	4	13.5	4	88	0	54	38	24	11	25	1.88
22379--22417	4	9.5	4	83	5	51	51	20	2	25	1.60
22256--22532	124	2.2	124	84	4	362	30	18	12	38	1.88
24108--24137	4	7.5	4	100	0	60	23	0	0	76	0.78
28751--28918	84	2.0	84	91	0	273	34	25	16	23	1.95
30428--30453	2	13.0	2	100	0	52	50	0	0	50	1.00
35914--35944	13	2.4	13	94	0	53	0	32	0	67	0.91
37364--37420	14	4.3	14	86	13	84	8	14	24	52	1.69
37365--37440	24	3.1	24	87	7	100	11	11	21	55	1.68
38169--38243	10	7.7	10	69	21	61	9	12	21	57	1.62
38175--38239	16	4.1	16	95	0	121	7	12	23	56	1.61
38309--38341	16	2.1	16	100	0	66	6	12	24	57	1.57
38801--38909	21	5.3	21	74	5	89	43	15	22	19	1.88
38801--38911	41	2.7	41	88	4	170	42	16	22	18	1.89
38904--38956	20	2.7	20	93	0	88	28	28	18	24	1.98
39451--39488	20	1.9	20	88	0	58	13	15	21	50	1.78
40808--40852	18	2.5	18	88	0	72	26	44	15	13	1.83
41336--41391	20	2.8	20	81	2	69	39	21	23	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41380--41451	14	4.9	14	80	12	90	48	23	16	11	1.78
41394--41468	32	2.3	33	90	4	125	49	21	17	12	1.78
41485--41542	14	3.9	14	77	16	62	10	17	24	48	1.78
41480--41558	32	2.4	32	93	2	131	11	18	22	46	1.81
41499--41599	19	5.6	18	72	17	93	12	20	23	42	1.87
43595--43646	14	3.5	13	75	25	50	46	21	21	11	1.82
43576--43651	32	2.4	32	88	4	109	40	22	23	13	1.89
43604--43651	18	2.9	17	77	20	57	45	18	22	12	1.83
43672--43745	19	3.8	19	92	1	112	16	22	24	36	1.94
44798--44851	24	2.2	24	90	0	81	24	16	20	38	1.92
45026--45050	12	2.1	12	100	0	50	72	0	28	0	0.86
45348--45474	33	3.8	33	86	4	193	41	19	22	15	1.89
45349--45481	66	2.0	66	95	0	239	40	19	22	17	1.91
45474--45536	19	3.3	19	84	4	81	15	19	20	44	1.87
45483--45536	20	2.8	19	91	5	90	12	20	20	46	1.83
45643--45679	14	2.6	14	91	0	65	45	24	0	29	1.53
47115--47291	92	1.9	93	95	3	322	41	12	12	32	1.82
48989--49166	20	9.8	19	69	18	94	44	22	20	11	1.84
49014--49112	33	3.0	33	86	4	128	40	26	22	11	1.87
49084--49171	36	2.4	36	92	5	140	46	22	19	11	1.81
49084--49171	18	4.7	18	84	9	106	46	22	19	11	1.81
49167--49246	18	4.5	18	76	17	78	11	17	25	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49799--49899	20	4.9	21	71	12	59	18	19	18	42	1.89
49762--49855	20	4.7	20	80	2	89	23	18	24	34	1.96
49783--49917	41	3.3	41	82	4	139	19	21	20	38	1.94
49844--49936	20	4.6	20	78	4	96	17	24	18	39	1.91
49844--49936	41	2.3	41	100	0	186	17	24	18	39	1.91
50644--50672	7	4.1	7	100	0	58	0	27	0	72	0.85
60214--60254	2	21.0	2	95	5	75	51	0	0	48	1.00
60688--60729	22	1.9	22	85	0	57	21	7	2	69	1.25
62765--62823	16	3.8	16	93	2	93	44	8	15	32	1.76
63372--63418	22	2.2	21	78	10	51	42	6	8	42	1.60
65432--65483	23	2.3	23	80	3	61	19	5	7	67	1.36
66880--66981	37	2.8	37	83	0	132	43	15	11	29	1.82
69452--69494	3	15.0	3	80	9	54	62	0	2	34	1.08
69458--69494	14	2.6	14	91	8	58	64	0	2	32	1.07
69452--69494	17	2.5	17	88	7	61	62	0	2	34	1.08
70200--70254	13	4.2	13	75	13	58	49	12	3	34	1.59
70240--70338	33	3.0	33	94	1	164	45	15	7	32	1.73
72636--72688	23	2.3	23	83	3	61	30	16	18	33	1.94
76202--76253	20	2.6	20	96	0	95	30	21	17	30	1.96
80794--80864	27	2.6	27	81	2	70	23	9	18	47	1.78
80887--80926	15	2.7	15	85	11	55	70	0	0	30	0.88
81516--81560	24	2.0	23	86	8	65	33	0	4	62	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82507--82541	3	11.7	3	100	0	70	31	0	0	68	0.90
83776--83816	2	20.5	2	100	0	82	51	0	0	48	1.00
88729--88816	30	2.9	30	75	8	88	44	5	3	46	1.43
96390--96429	21	1.9	21	85	10	55	35	10	2	52	1.48
98421--98478	22	2.6	23	94	2	100	17	22	43	17	1.88
98771--98845	22	3.4	22	89	5	107	42	0	0	57	0.98
98793--98849	11	5.0	12	75	18	59	43	0	0	56	0.99
98890--98941	26	2.0	26	88	0	77	34	19	7	38	1.80
99368--99516	61	2.5	60	91	4	228	40	12	17	30	1.86
99973--100029	2	30.0	2	89	10	93	49	0	0	50	1.00
100763--100859	36	2.7	36	87	4	126	42	24	1	31	1.62
101799--101878	35	2.3	35	89	4	117	33	0	22	43	1.53

Tables:   1

The End!