genome.fa.s5593.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005593.1 Hibiscus syriacus cultivar Beakdansim tig00013005_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64631

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7570--7630	21	3.2	21	65	29	64	31	4	21	42	1.74
7562--7681	35	3.3	36	88	6	172	33	5	18	43	1.72
12726--12770	21	2.1	21	87	0	63	31	28	24	15	1.96
14254--14557	149	2.0	149	98	0	590	26	16	20	35	1.94
14536--14580	23	2.0	23	86	0	63	20	24	28	26	1.99
15320--15380	21	3.2	21	65	29	64	31	4	21	42	1.74
15312--15430	35	3.3	36	88	5	161	31	5	19	43	1.72
16556--16599	21	2.1	21	100	0	88	54	13	4	27	1.58
21579--21626	19	2.5	20	89	3	71	47	4	14	33	1.63
24236--24287	21	2.4	22	80	6	61	40	9	0	50	1.35
25473--25501	15	1.9	15	100	0	58	34	6	0	58	1.25
27097--27146	24	2.1	24	81	7	57	42	0	6	52	1.26
29840--29964	51	2.5	50	82	1	142	16	32	31	19	1.94
29988--30097	48	2.2	50	81	10	129	24	24	23	27	2.00
34219--34254	18	2.0	18	100	0	72	22	22	27	27	1.99
35765--35985	110	2.0	111	92	2	374	46	9	8	35	1.67
36109--36149	10	4.1	10	84	12	57	39	0	29	31	1.57
36272--36398	51	2.5	51	83	1	148	18	28	34	18	1.95
36881--36945	28	2.3	28	84	12	89	43	16	13	26	1.86
38331--38363	2	16.5	2	100	0	66	48	0	0	51	1.00
41433--41547	55	2.1	55	95	0	203	25	25	14	34	1.94
49496--49826	117	2.8	116	82	3	394	26	24	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57706--57933	52	4.4	52	91	5	354	27	10	14	47	1.77
57718--57933	103	2.1	106	93	2	375	26	11	14	48	1.77
60422--60792	146	2.6	145	90	1	566	21	25	20	32	1.97
60984--61041	12	4.8	12	91	0	89	60	12	17	10	1.58
61082--61136	3	17.7	3	92	7	92	65	0	0	34	0.93
61082--61136	25	2.2	25	96	0	101	65	0	0	34	0.93
61336--61586	55	4.6	55	86	3	310	29	23	13	34	1.92
61305--61588	110	2.6	109	84	3	338	30	22	13	33	1.93
61617--63139	54	29.0	54	82	7	1569	23	24	18	32	1.97
61617--63139	158	9.6	159	81	7	1596	23	24	18	32	1.97
61617--63126	159	9.6	157	80	8	1501	23	24	18	32	1.97
61617--63129	106	14.4	105	82	7	1498	23	24	18	32	1.97
63475--63693	36	6.1	36	77	6	203	22	18	21	36	1.95
63546--63693	71	2.1	72	85	3	201	20	16	22	39	1.92

Tables:   1

The End!