genome.fa.s5599.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005599.1 Hibiscus syriacus cultivar Beakdansim tig00013024_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204908

Tables:   1   2   

This is table  2  of  2  ( 160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172059--172089	2	15.5	2	93	0	53	48	3	0	48	1.17
172082--172131	17	3.0	16	80	8	55	44	0	0	56	0.99
172129--172157	13	2.2	13	100	0	58	31	6	0	62	1.22
172525--172552	2	14.0	2	100	0	56	50	0	0	50	1.00
173004--173044	3	13.7	3	89	0	64	29	0	0	70	0.87
173255--173307	21	2.5	21	84	0	70	20	22	18	37	1.94
173297--173390	20	4.7	20	82	2	125	40	19	20	20	1.92
173300--173390	41	2.2	41	86	1	121	41	18	19	19	1.90
173945--173998	20	2.7	19	91	8	90	37	20	24	18	1.94
174040--174161	33	3.5	33	82	8	136	10	21	19	48	1.79
174098--174161	20	3.1	21	82	8	78	10	25	17	46	1.80
175856--176131	94	3.0	93	88	7	406	21	12	18	47	1.81
176220--176277	19	3.0	19	87	5	89	50	15	22	12	1.77
176246--176315	33	2.1	33	86	5	97	50	27	15	7	1.70
176340--176419	33	2.4	33	89	0	115	11	20	21	47	1.80
176364--176443	19	4.4	19	71	18	71	12	20	20	47	1.81
176896--176962	21	3.2	21	66	6	55	23	35	20	19	1.95
178314--178349	14	2.6	14	95	0	63	33	0	22	44	1.53
178456--178502	19	2.5	19	92	0	67	46	21	19	12	1.82
178464--178539	19	4.3	19	74	16	81	46	19	25	9	1.79
178535--178580	19	2.4	19	92	0	74	13	13	26	47	1.78
178550--178709	33	4.8	33	92	1	241	12	21	20	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178602--178691	14	5.7	14	70	23	63	12	24	18	44	1.84
178618--178729	19	6.4	19	72	20	100	13	23	19	43	1.86
178703--178775	20	3.6	20	68	23	62	23	17	24	34	1.96
181020--181046	14	1.9	14	100	0	54	7	11	29	51	1.64
181246--181299	24	2.2	24	86	0	72	42	20	14	22	1.88
182165--182349	20	9.2	20	86	8	182	29	18	21	30	1.97
182176--182391	20	10.7	21	82	7	119	32	17	21	28	1.96
182165--182392	40	5.7	40	80	6	162	31	17	21	29	1.96
182164--182349	60	3.1	60	83	5	225	29	18	20	31	1.96
185784--185818	16	2.2	16	100	0	70	34	11	25	28	1.91
195313--195346	15	2.3	15	89	0	50	26	8	14	50	1.72
195879--195909	6	5.2	6	100	0	62	35	48	16	0	1.46
196416--196447	6	5.5	6	96	3	57	0	15	53	31	1.43
196539--196575	16	2.2	17	95	4	67	32	27	16	24	1.96
196569--196681	20	5.6	20	66	4	64	37	24	18	19	1.94
196588--196721	21	6.5	21	76	6	148	33	26	16	23	1.96
196564--196702	41	3.4	41	91	1	215	35	25	17	21	1.95
196686--196731	21	2.2	21	84	0	56	39	30	10	19	1.86

Tables:   1   2

The End!