genome.fa.s561.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000561.1 Hibiscus syriacus cultivar Beakdansim tig00001095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  332011

Tables:   1   2   

This is table  2  of  2  ( 163 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268706--268760	25	2.2	25	100	0	110	30	16	10	41	1.83
270412--270440	3	9.7	3	100	0	58	65	0	0	34	0.93
272014--272043	11	2.7	11	100	0	60	23	0	20	56	1.42
273602--273700	21	4.8	20	74	6	81	37	22	18	22	1.94
273665--273719	20	2.8	19	80	5	65	43	25	18	12	1.85
273706--273936	20	11.6	20	82	5	261	35	25	17	21	1.95
273667--273936	40	6.8	39	89	1	252	37	24	17	20	1.94
274616--274662	24	2.0	24	87	8	69	25	14	21	38	1.92
277154--277350	33	5.8	34	76	13	190	47	17	20	14	1.83
277154--277356	19	11.7	19	73	20	194	46	17	21	15	1.84
277182--277356	52	3.3	52	95	0	314	45	17	22	14	1.84
277365--277462	19	5.4	19	82	13	134	15	22	16	45	1.84
277346--277462	53	2.2	53	95	1	209	14	24	17	43	1.86
277569--277605	14	2.6	14	91	0	65	45	21	0	32	1.52
279530--279595	19	3.4	20	87	6	91	45	27	16	10	1.80
279586--279640	14	3.6	14	76	21	56	47	21	20	10	1.80
279567--279645	33	2.4	33	95	0	140	45	21	21	11	1.83
279546--279634	19	5.1	17	78	16	78	49	22	19	8	1.76
279641--279769	19	7.3	19	73	17	116	8	17	28	44	1.78
279641--279732	33	2.8	33	93	3	150	7	18	28	45	1.76
279817--280099	93	3.1	93	98	0	550	45	19	12	22	1.83
281862--281918	14	3.7	14	75	20	60	8	24	22	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281846--281926	33	2.5	33	93	0	135	8	20	22	48	1.77
281903--281978	21	3.7	21	83	3	109	11	25	17	46	1.82
281902--281979	41	1.9	41	97	0	147	12	25	16	44	1.83
282058--282128	33	2.2	33	92	0	115	47	18	22	11	1.80
282511--282664	20	7.7	20	81	7	168	18	18	26	37	1.93
282510--282664	40	3.8	40	82	4	186	18	18	26	37	1.93
282651--282733	21	4.0	21	70	6	69	26	16	22	33	1.96
287184--287232	22	2.2	22	96	0	89	34	14	10	40	1.79
295028--295060	16	2.1	16	94	0	57	57	21	12	9	1.62
295126--295199	10	7.6	10	69	22	59	59	20	9	10	1.58
295133--295201	16	4.3	16	86	0	93	59	20	8	11	1.58
295132--295201	32	2.2	32	92	0	113	58	20	10	11	1.61
295875--295930	14	4.3	14	78	17	66	53	23	12	10	1.69
295855--295923	24	2.9	24	86	0	102	57	18	10	13	1.63
298868--298905	20	1.9	20	94	0	67	31	18	23	26	1.97
311402--311449	2	24.0	2	100	0	96	50	0	0	50	1.00
313600--313632	15	2.2	15	94	0	57	9	69	15	6	1.34
315492--315540	2	24.5	2	100	0	98	48	0	0	51	1.00
316790--316830	21	1.9	22	85	5	57	34	4	12	48	1.62
322953--323051	2	49.5	2	100	0	198	49	0	0	50	1.00
331158--331215	29	2.0	29	96	3	109	31	24	10	34	1.89

Tables:   1   2

The End!