genome.fa.s5632.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005632.1 Hibiscus syriacus cultivar Beakdansim tig00013131_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66437

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8590--8627	9	4.2	9	83	9	51	78	2	15	2	0.97
8590--8624	14	2.6	13	86	4	52	80	2	14	2	0.95
15544--15586	23	1.9	21	81	13	50	34	13	18	32	1.90
19261--19433	90	1.9	91	89	1	267	28	21	26	23	1.99
20955--21033	24	3.3	24	77	7	72	29	18	18	32	1.96
20998--21054	24	2.4	24	96	0	105	31	14	24	29	1.94
23138--23319	90	2.0	91	84	1	240	29	21	26	21	1.99
24070--24608	269	2.0	269	95	0	970	42	9	18	30	1.81
30525--30553	14	2.1	14	93	6	51	24	27	0	48	1.51
32219--32283	33	2.0	32	82	8	78	33	1	32	32	1.67
36319--36353	17	2.1	16	89	5	52	0	11	5	82	0.82
36698--36762	33	2.0	32	82	8	78	33	1	32	32	1.67
42428--42478	25	2.0	25	100	0	102	49	15	11	23	1.78
50564--50605	15	2.6	16	88	7	59	57	0	28	14	1.38
57201--57301	36	2.8	36	90	1	150	32	34	4	27	1.78
57237--57340	33	3.1	33	82	9	95	30	35	1	31	1.69
57679--57725	25	2.0	24	84	16	62	74	8	17	0	1.05
57940--57988	23	2.1	24	81	11	57	14	22	0	63	1.30
61695--61778	13	7.2	11	72	25	66	32	35	3	28	1.74
61692--61792	35	2.9	36	92	2	161	32	35	4	26	1.78
61693--61831	35	4.1	33	83	10	97	30	35	2	30	1.72
63046--63105	27	2.2	27	100	0	120	66	8	21	3	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63050--63112	27	2.5	25	92	7	101	68	6	22	3	1.27

Tables:   1

The End!