genome.fa.s5637.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005637.1 Hibiscus syriacus cultivar Beakdansim tig00013142_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  575832

Tables:   1   2   

This is table  2  of  2  ( 227 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302144--302284	59	2.4	59	83	3	167	41	8	18	31	1.80
302853--302909	24	2.4	24	93	0	96	28	14	8	49	1.72
305774--305815	21	2.0	22	85	4	59	30	2	21	45	1.65
309331--309414	14	5.8	14	68	12	53	71	3	3	21	1.17
309420--309468	24	1.9	27	84	12	68	71	2	4	22	1.13
310190--310220	15	2.1	15	93	0	53	6	0	29	64	1.18
310533--310557	9	2.8	9	100	0	50	72	0	0	28	0.86
310611--310812	37	5.4	37	84	4	237	43	6	2	47	1.45
310602--310770	75	2.3	73	84	4	221	44	7	1	46	1.41
310611--310812	75	2.7	74	84	4	210	43	6	2	47	1.45
312363--312429	35	1.9	35	93	0	116	55	7	16	20	1.65
319230--319310	23	3.7	22	83	4	92	19	25	30	23	1.98
328089--328698	305	2.0	305	99	0	1202	28	20	19	31	1.97
328870--328912	16	2.6	16	89	10	61	72	0	0	27	0.85
329821--329850	14	2.1	15	93	6	53	6	0	30	63	1.20
330169--330235	5	13.2	5	76	9	64	74	0	0	25	0.82
330246--330620	39	9.3	38	70	21	153	45	4	2	47	1.39
330246--330338	40	2.4	37	81	11	107	44	3	1	51	1.24
330320--330358	20	2.0	20	94	0	69	35	10	0	53	1.35
330283--330392	58	1.9	57	88	5	168	43	6	0	49	1.34
330324--330367	20	2.2	20	83	0	52	40	9	0	50	1.34
330246--330428	97	1.9	97	83	4	237	47	4	1	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330342--330433	37	2.5	38	85	5	118	50	4	2	43	1.34
330341--330540	39	5.1	41	77	13	154	47	5	3	44	1.42
331301--331365	22	3.0	22	76	13	62	26	16	23	33	1.96
334878--334917	21	1.9	20	85	10	53	30	5	5	60	1.40
335025--335084	24	2.6	23	82	15	79	33	26	3	36	1.73
335216--335281	29	2.3	29	84	5	80	22	15	3	59	1.50
335291--335323	14	2.4	14	94	0	57	39	15	0	45	1.46
337513--337574	17	3.6	17	68	12	54	11	9	12	66	1.46
337495--337575	35	2.3	35	93	4	137	11	11	11	66	1.45
338682--338727	18	2.6	18	96	0	83	23	19	32	23	1.97
339116--339336	54	4.1	54	85	2	300	32	19	15	32	1.93
344873--344897	13	1.9	13	100	0	50	56	8	20	16	1.65
346040--346136	42	2.3	42	80	1	106	24	20	21	32	1.97
346297--346392	42	2.3	41	83	1	111	25	21	20	32	1.98
345910--346681	257	3.0	259	87	0	1145	33	14	16	34	1.90
346737--346875	14	9.1	14	68	18	66	73	2	19	5	1.12
346814--346925	27	4.0	27	74	14	93	73	0	20	5	1.09
346826--346873	17	2.6	17	81	12	51	75	2	22	0	0.91
347678--348036	175	2.1	175	96	0	664	25	33	17	22	1.96
349157--349187	16	1.9	16	93	0	53	19	9	3	67	1.33
352028--352829	54	14.8	54	83	3	884	33	20	17	28	1.95
353187--353364	95	1.9	94	85	1	248	25	22	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373289--373332	20	2.2	20	88	4	63	34	0	22	43	1.54
377023--377060	16	2.5	15	91	8	60	34	39	13	13	1.83
377864--377908	18	2.5	18	92	0	72	26	22	20	31	1.98
385088--385163	22	3.5	22	74	3	73	26	15	25	32	1.95
387082--387141	21	2.8	20	82	5	66	31	20	13	35	1.91
390768--390794	14	1.9	14	100	0	54	37	11	0	51	1.37
391324--391483	65	2.5	65	88	3	234	32	21	16	29	1.95
396090--396251	84	1.9	83	87	3	236	31	22	17	27	1.97
396155--396203	19	2.6	19	90	0	80	32	28	18	20	1.96
404281--404322	20	2.0	21	90	4	68	50	11	16	21	1.77
404278--404377	18	5.4	18	73	15	71	45	12	18	25	1.83
407877--407916	17	2.4	17	95	0	71	57	12	17	12	1.65
411653--411691	17	2.2	18	86	4	53	43	7	17	30	1.77
415725--415797	19	3.2	24	64	28	68	32	23	8	35	1.84
415714--415899	44	4.2	44	94	1	318	31	23	7	37	1.83
415906--415947	20	2.1	20	90	0	66	54	21	4	19	1.62
416734--416767	9	3.7	9	84	7	50	85	0	0	14	0.60
416736--416776	18	2.2	19	91	4	66	80	0	2	17	0.82
416736--416776	10	4.4	9	85	14	57	80	0	2	17	0.82
416819--416865	17	2.7	17	78	12	51	72	0	10	17	1.12
416963--416987	13	1.9	13	100	0	50	80	0	8	12	0.92
416968--417025	18	3.2	18	77	2	62	74	0	1	24	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417125--417159	8	4.4	8	96	0	52	51	5	0	42	1.25
417129--417180	2	26.5	2	83	11	63	51	1	3	42	1.31
417143--417206	23	2.9	22	81	6	67	62	0	3	34	1.11
417196--417236	21	2.0	21	85	9	57	70	0	7	21	1.11
419963--420109	77	1.9	77	95	0	267	32	8	14	44	1.76
428785--428849	23	2.8	23	83	0	94	30	24	26	18	1.98
429471--429573	45	2.3	46	84	1	136	21	18	18	41	1.90
447521--447730	93	2.3	93	92	0	339	40	13	10	36	1.78
447730--447902	66	2.6	66	81	6	215	39	13	4	42	1.66
449359--449580	54	4.1	54	85	6	315	29	25	14	31	1.95
449558--450064	54	9.4	54	80	5	544	24	23	18	32	1.97
449567--450063	108	4.6	108	85	3	626	24	24	18	32	1.97
450413--450588	74	2.4	74	89	0	264	23	17	22	36	1.95
450413--450590	37	4.8	37	87	4	234	23	17	22	36	1.95
451853--452113	125	2.1	125	83	2	328	24	27	14	32	1.95
453049--453124	40	1.9	40	86	7	111	26	18	13	42	1.87
456137--456279	55	2.6	55	86	2	180	21	21	11	44	1.84
456399--456442	23	2.0	22	86	4	61	59	18	6	15	1.58
459910--459963	25	2.2	25	86	6	74	48	5	0	46	1.25
463299--463339	18	2.3	18	100	0	82	46	19	9	24	1.80
464089--465099	534	1.9	534	95	0	1819	34	12	15	38	1.85
477653--477695	22	2.0	22	100	0	86	32	34	9	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487262--487343	40	2.0	40	97	0	155	24	17	25	32	1.96
487448--487570	45	2.7	45	91	3	194	38	8	21	30	1.85
491531--491573	18	2.4	18	100	0	86	30	30	4	34	1.78
494662--494700	18	2.2	18	100	0	78	28	30	5	35	1.79
499592--499637	20	2.3	20	92	0	74	45	21	21	10	1.82
518720--518744	12	2.1	12	100	0	50	0	0	8	92	0.40
535543--535614	29	2.5	29	90	4	110	22	11	15	51	1.74
536665--536754	47	1.9	47	97	0	171	34	14	3	47	1.61
543241--543304	30	2.2	30	82	2	76	42	3	17	37	1.65
543787--543811	13	1.9	13	100	0	50	16	56	20	8	1.65
544523--544658	39	3.5	39	86	2	184	16	25	25	33	1.96
544535--544686	78	1.9	78	82	2	189	19	25	23	32	1.97
551686--551716	15	2.1	15	93	0	53	35	16	9	38	1.81
557853--557993	39	3.6	39	87	1	167	17	24	24	32	1.97
559151--559622	59	8.0	59	89	0	714	27	23	11	37	1.89
559151--559622	176	2.7	176	90	1	748	27	23	11	37	1.89
559440--559529	27	3.1	27	63	25	67	23	23	12	41	1.88
566132--566491	59	6.1	59	92	0	576	27	24	11	36	1.90
573846--573894	19	2.6	19	84	9	57	24	28	20	26	1.99

Tables:   1   2

The End!