genome.fa.s565.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000565.1 Hibiscus syriacus cultivar Beakdansim tig00001104_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165453

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3547--3584	20	1.9	20	88	0	58	26	26	5	42	1.76
9421--9465	21	2.1	21	84	8	56	55	4	6	33	1.46
9559--9631	2	37.0	2	97	2	139	49	0	0	50	1.00
9648--9702	5	11.0	5	88	0	74	58	7	0	34	1.26
13709--13770	22	2.8	23	85	7	92	33	27	8	30	1.86
18288--18337	23	2.2	23	82	7	57	30	22	10	38	1.86
30510--30555	24	1.9	24	82	8	58	60	6	2	30	1.34
31792--31856	32	2.0	32	100	0	130	35	18	18	27	1.94
47876--47989	37	3.1	37	100	0	228	19	25	36	18	1.94
57225--57250	13	2.0	13	100	0	52	23	30	15	30	1.95
62054--62292	79	3.0	79	89	1	361	33	21	17	27	1.96
72203--72243	21	1.9	22	90	5	66	31	19	17	31	1.95
72205--72256	22	2.5	22	78	15	56	32	23	13	30	1.93
72798--72854	19	3.0	19	82	5	71	36	5	24	33	1.78
74193--77787	4	903.5	4	97	1	6618	48	26	0	25	1.51
80628--80654	14	1.9	14	100	0	54	66	18	0	14	1.25
80639--80717	11	7.4	11	84	5	108	62	20	1	16	1.40
80615--80708	21	4.3	21	86	6	125	63	21	1	13	1.35
80615--80717	32	3.1	32	79	9	109	63	20	0	15	1.37
83688--83721	17	2.0	17	100	0	68	29	17	11	41	1.85
98716--98754	13	3.1	13	85	3	53	7	23	0	69	1.14
120877--120924	23	2.1	23	84	0	60	35	10	18	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120877--120932	23	2.4	23	78	0	58	35	12	16	35	1.86
121347--121409	23	2.7	23	92	0	99	38	20	4	36	1.74
121777--121839	23	2.7	23	92	0	99	38	20	4	36	1.74
120997--122047	430	2.5	430	95	3	1915	38	12	7	41	1.71
122254--122339	39	2.2	39	93	0	145	18	13	18	48	1.80
122595--122631	18	2.1	18	89	0	56	51	10	5	32	1.60
123057--123110	23	2.3	23	93	0	90	40	16	5	37	1.72
125573--126738	182	6.4	183	94	1	2028	33	16	14	36	1.89
125573--126738	365	3.2	366	95	1	2037	33	16	14	36	1.89
128200--128274	3	25.0	3	73	0	60	22	34	6	36	1.81
128204--128286	12	6.9	12	83	0	94	20	34	8	36	1.83
128208--128286	36	2.2	36	90	0	122	20	35	8	35	1.84
128228--128289	18	3.4	18	79	0	79	17	35	9	37	1.83
128204--128289	6	14.3	6	77	0	64	19	34	8	37	1.82
129730--130812	389	2.8	391	96	2	1989	32	16	14	36	1.90
129740--130812	195	5.5	197	97	1	1975	32	16	15	36	1.90
132764--132828	33	2.0	33	90	3	105	23	47	0	29	1.52
132862--132926	21	3.1	21	80	6	69	15	29	15	40	1.88
135152--135198	20	2.4	19	80	19	69	21	17	10	51	1.75
135319--135364	20	2.3	20	89	10	76	17	17	10	54	1.70
136183--136235	26	2.0	26	100	0	106	22	18	11	47	1.81
137172--137223	18	3.0	18	88	5	72	36	5	28	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137193--137223	16	1.9	16	100	0	62	32	6	32	29	1.83
137770--137969	62	3.2	62	88	5	296	43	32	9	15	1.78
137770--138003	33	7.5	32	82	12	258	43	31	9	15	1.78
137778--138004	89	2.5	90	87	5	287	43	31	9	15	1.79
141850--141918	24	3.1	24	64	20	58	39	1	2	56	1.23
142230--142272	19	2.2	20	80	19	56	55	0	2	41	1.12
142574--143138	246	2.3	235	80	11	567	41	4	15	37	1.69
144772--144815	22	2.0	22	90	0	70	52	2	11	34	1.50
147188--147230	18	2.4	18	100	0	86	34	11	23	30	1.90
148631--148660	3	10.3	3	92	7	53	0	33	0	66	0.92
148631--148657	14	1.9	14	100	0	54	0	33	0	66	0.92
159458--159809	142	2.5	141	85	3	449	46	14	12	26	1.80
161027--161057	3	10.3	3	100	0	62	64	0	0	35	0.94
161828--161877	16	3.2	16	85	5	66	52	4	0	44	1.20
161832--161878	15	3.1	15	76	11	51	51	4	0	44	1.21
162121--162269	60	2.4	59	80	8	174	32	18	18	31	1.94
163928--164207	45	6.2	46	87	4	349	24	20	9	45	1.81
163999--164116	24	5.2	24	70	22	92	23	20	10	45	1.81
163944--164207	135	2.0	135	87	4	390	23	21	9	45	1.82
164630--164807	95	1.9	95	87	4	261	25	24	12	37	1.91

Tables:   1

The End!