genome.fa.s5654.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005654.1 Hibiscus syriacus cultivar Beakdansim tig00013217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65065

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391--478	43	2.0	43	84	0	113	26	18	12	43	1.85
14561--14683	60	2.0	60	87	0	174	27	18	19	34	1.95
16284--16416	60	2.2	60	79	9	146	35	20	5	39	1.75
16331--16454	60	2.0	61	80	7	137	32	20	5	41	1.76
16654--16749	29	3.2	29	71	16	97	45	5	16	32	1.70
16602--16779	60	3.0	60	80	9	202	42	6	19	31	1.77
21304--21373	27	2.6	27	93	2	115	25	1	24	48	1.59
22244--22978	81	9.1	81	89	0	1033	34	10	22	32	1.89
29431--30013	81	7.2	81	86	2	760	34	11	20	33	1.88
29975--30032	22	2.6	22	83	0	80	39	10	20	29	1.86
32558--32646	33	2.7	32	82	3	97	35	37	7	19	1.81
37368--37436	21	3.3	21	87	2	95	11	24	8	55	1.64
40093--40143	22	2.3	23	82	3	59	25	29	27	17	1.98
40104--40152	23	2.2	23	88	3	73	18	36	24	20	1.94
46769--46834	14	4.6	14	73	26	57	33	7	19	39	1.80
46750--46834	44	1.9	44	85	4	118	34	7	18	40	1.78
46941--47052	23	4.9	23	87	2	136	17	26	25	30	1.97
46940--47062	46	2.7	45	86	3	156	17	25	25	32	1.96
47210--47244	15	2.4	15	90	4	54	42	0	17	40	1.49
47341--47392	2	26.0	2	100	0	104	50	0	0	50	1.00
47309--47352	21	2.0	21	82	8	52	40	0	15	43	1.47
60068--60107	19	1.9	19	85	14	53	70	0	10	20	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60660--60722	33	1.9	33	96	0	117	26	15	11	46	1.80
61463--62813	104	13.0	106	87	5	1858	21	18	25	34	1.96
61463--62813	207	6.5	211	87	5	1875	21	18	25	34	1.96
62814--62944	36	3.7	36	78	7	126	40	13	20	25	1.89
63669--63742	21	3.5	22	76	9	82	22	10	24	41	1.86
64325--64382	25	2.3	25	84	3	71	1	13	5	79	0.98
64319--64388	11	6.5	10	73	18	52	1	11	5	81	0.92
64317--64388	19	4.0	18	84	8	85	1	12	5	80	0.94

Tables:   1

The End!