genome.fa.s5656.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005656.1 Hibiscus syriacus cultivar Beakdansim tig00013226_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75243

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10447--10472	2	13.0	2	100	0	52	50	0	0	50	1.00
10618--10672	20	2.8	20	91	0	92	10	27	20	41	1.85
10660--10716	22	2.6	22	85	0	87	15	19	22	42	1.89
11199--11255	24	2.3	25	90	3	89	42	7	19	31	1.78
11320--11351	5	6.6	5	96	3	57	0	40	21	37	1.54
12642--12820	89	2.0	89	100	0	358	26	17	21	34	1.96
12941--13025	34	2.5	34	92	0	134	16	23	23	36	1.94
13047--13100	22	2.5	22	96	0	99	35	18	33	12	1.89
13130--13173	23	1.9	23	100	0	88	9	25	40	25	1.84
13127--13180	23	2.4	22	84	9	81	11	24	42	22	1.85
13631--13989	172	2.1	173	90	1	569	39	5	18	37	1.73
15731--15761	6	5.2	6	96	0	53	19	0	61	19	1.35
16215--16889	37	16.7	42	79	14	296	49	5	3	40	1.44
16255--16940	14	49.9	14	66	19	138	50	5	3	41	1.42
16258--16940	8	89.2	8	69	21	173	50	5	3	40	1.42
16292--16889	37	16.0	37	83	10	487	50	5	3	40	1.44
16576--16917	65	5.2	66	76	15	325	50	4	3	40	1.42
16235--16919	200	3.3	198	79	13	607	50	5	3	40	1.44
16261--16940	237	2.8	239	87	9	936	50	5	3	40	1.42
16472--16931	23	18.4	27	71	19	132	50	5	3	40	1.42
20353--20401	18	2.7	18	100	0	98	26	34	14	24	1.94
21719--21745	10	2.7	10	100	0	54	59	29	11	0	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22138--22164	13	2.1	13	100	0	54	22	25	14	37	1.93
26185--26503	40	7.5	41	70	14	181	25	18	31	24	1.98
26171--26503	128	2.6	129	94	1	580	24	18	30	25	1.98
26925--26968	15	2.9	15	93	0	70	43	4	20	31	1.72
27177--27263	29	3.1	28	83	11	115	44	12	11	31	1.78
27761--27861	35	2.9	36	83	4	125	33	13	20	31	1.92
28153--28217	4	16.2	4	77	17	64	24	0	23	52	1.48
28158--28217	16	3.8	16	90	0	102	25	0	23	51	1.48
43798--43842	16	2.8	16	100	0	90	55	24	13	6	1.62
52758--52822	2	33.0	2	96	3	123	50	0	0	49	1.00
54361--54797	69	6.3	69	85	2	463	29	21	25	22	1.99
54361--54734	207	1.8	207	86	2	545	30	21	26	22	1.99
54361--54797	207	2.1	207	83	5	544	29	21	25	22	1.99
56534--56862	173	1.9	173	92	1	552	27	22	14	36	1.93
59406--59631	117	1.9	117	90	0	362	39	11	13	35	1.80
62543--62583	15	2.7	15	84	3	55	46	0	2	51	1.14
66585--66646	30	2.1	30	100	0	124	33	9	33	22	1.87
70714--70757	20	2.2	20	100	0	88	38	13	4	43	1.65

Tables:   1

The End!