Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005660.1 Hibiscus syriacus cultivar Beakdansim tig00013232_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80990

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10242--10289
19
2.5
20
80
12
57
79
0
6
14
0.92
10242--10288
18
2.5
19
86
10
62
78
0
6
14
0.93
10983--11435
115
4.0
115
95
0
802
34
14
19
31
1.92
10983--11435
229
2.0
229
94
0
800
34
14
19
31
1.92
12479--13769
113
11.4
112
82
5
1386
38
14
17
28
1.89
12215--12750
271
1.9
277
86
7
768
36
13
19
30
1.90
12477--13647
341
3.5
339
96
1
2102
38
14
18
29
1.90
13566--13858
124
2.4
124
87
5
404
42
16
18
22
1.89
14002--14052
3
17.3
3
88
11
79
31
0
0
68
0.90
15725--15769
23
2.0
23
81
0
54
28
26
24
20
1.99
15888--15956
25
2.8
25
95
0
129
27
24
28
18
1.98
20939--21007
25
2.8
25
97
0
129
28
26
27
17
1.97
23786--23834
25
2.0
25
84
8
64
42
4
0
53
1.20
23830--24063
120
2.0
120
83
5
303
36
8
8
46
1.64
23934--23975
20
2.2
19
86
4
57
33
0
2
64
1.07
24022--24065
23
1.9
23
85
0
61
47
2
0
50
1.13
24035--24079
16
3.0
16
84
9
51
51
0
0
48
1.00
27662--27695
17
1.9
18
94
5
61
55
2
5
35
1.39
27902--27961
2
30.0
2
100
0
120
50
0
0
50
1.00
30452--30527
40
1.9
40
88
0
116
18
11
18
51
1.76
37941--38030
31
2.8
33
80
9
89
35
3
11
50
1.55
38665--38917
125
2.0
125
99
0
497
38
11
20
29
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40648--40695
3
16.3
3
79
12
55
27
0
2
70
0.98
41332--41361
14
2.1
15
93
6
53
13
13
0
73
1.10
43865--44122
94
2.7
94
86
6
322
32
16
18
31
1.94
45119--45460
160
2.1
160
93
0
585
33
21
19
25
1.97
45569--46148
124
4.9
117
74
13
447
31
23
18
26
1.98
46203--46502
84
3.6
84
79
3
280
35
21
17
26
1.95
46744--46795
3
17.7
3
76
11
54
28
1
1
67
1.12
48466--48502
11
3.3
11
96
3
65
24
10
0
64
1.25
53342--53394
21
2.5
21
81
0
61
22
26
16
33
1.96
53387--53457
20
3.5
20
78
3
88
36
19
21
22
1.95
53632--53693
18
3.0
22
72
18
69
25
38
16
19
1.92
54018--54091
33
2.2
34
83
7
89
12
18
25
43
1.85
55981--56104
20
6.5
20
78
10
134
38
20
20
20
1.93
56151--56217
20
3.3
20
91
4
91
19
19
23
37
1.94
56182--56287
34
3.1
34
79
2
133
13
18
20
47
1.82
56165--56284
20
6.7
20
70
21
77
14
20
21
44
1.86
56256--56294
20
2.0
20
84
0
51
15
17
20
46
1.84
58232--58267
14
2.6
14
90
0
54
30
0
22
47
1.52
58415--58460
19
2.4
19
96
0
83
13
21
17
47
1.81
58465--58553
20
4.4
20
84
2
117
19
21
23
35
1.95
60982--61035
24
2.2
24
93
0
90
40
20
18
20
1.91
61913--62044
20
6.6
20
84
1
165
23
19
18
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62041--62086
21
2.2
21
88
0
65
36
17
28
17
1.92
64887--64957
35
2.0
35
97
0
133
28
19
12
39
1.88
77697--77777
26
3.2
25
75
15
76
35
3
1
59
1.23
77697--77746
25
2.0
25
85
11
68
34
2
0
64
1.05
78332--79648
657
2.0
661
90
2
2098
36
14
11
38
1.81

Tables:   1

The End!