Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005661.1 Hibiscus syriacus cultivar Beakdansim tig00013234_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89565

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5890--5931
22
1.9
22
90
0
66
26
7
0
66
1.17
10292--10359
23
3.0
23
73
14
70
29
20
23
26
1.99
13863--14020
59
2.7
59
93
2
255
29
24
22
22
1.99
13863--14020
30
5.3
30
93
2
257
29
24
22
22
1.99
13863--14045
89
2.0
90
86
3
253
30
25
22
21
1.99
16617--16656
20
2.0
21
85
5
55
25
17
10
47
1.78
18747--18900
65
2.4
65
87
3
213
30
19
21
28
1.97
24043--24100
22
2.7
23
82
12
70
37
1
0
60
1.07
25981--26047
32
2.1
32
86
5
91
35
14
13
35
1.86
26525--26558
14
2.5
14
85
4
52
58
8
0
32
1.29
26967--27090
66
1.9
66
80
6
144
44
6
4
44
1.51
27800--27833
15
2.3
15
89
0
50
44
38
8
8
1.67
31457--31529
12
6.2
11
88
4
76
61
0
1
36
1.05
31457--31520
3
21.3
3
93
0
110
62
0
1
35
1.05
31751--32407
114
5.9
113
92
3
1012
28
19
13
38
1.90
33132--33527
83
4.8
83
99
0
774
37
23
11
28
1.89
34663--34714
7
7.4
7
79
12
54
0
17
0
82
0.66
34664--34733
18
3.9
18
78
19
83
0
18
0
81
0.69
34664--34731
19
3.6
19
84
13
95
0
17
0
82
0.67
34669--34735
9
7.0
10
83
10
70
0
20
0
79
0.74
38666--38723
3
19.3
3
89
7
91
62
0
1
36
1.06
38666--38732
21
3.2
21
91
6
93
61
0
1
37
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38955--39621
113
5.9
113
95
1
1111
28
19
13
38
1.90
40348--40660
83
3.8
83
95
1
574
38
23
10
27
1.88
41796--41844
14
3.4
14
83
8
55
2
20
0
77
0.87
52463--52500
15
2.8
13
88
11
51
68
2
5
23
1.23
54693--54741
3
16.3
3
95
0
89
63
0
0
36
0.95
54684--54739
12
4.6
13
86
10
75
60
0
0
39
0.97
56931--56990
30
1.9
32
86
6
88
46
3
0
50
1.18
57016--57185
89
1.9
87
82
9
209
50
3
0
45
1.18
57352--57385
14
2.5
14
90
4
52
35
17
11
35
1.87
57359--57385
14
1.9
14
100
0
54
37
18
14
29
1.91
57395--57467
14
5.1
14
78
3
56
34
15
6
43
1.73
57395--57467
29
2.6
29
82
2
85
34
15
6
43
1.73
62401--62431
14
2.2
14
94
0
53
22
0
9
67
1.19
63128--63372
126
2.0
120
93
4
418
32
8
17
40
1.80
69408--69472
30
2.2
30
82
0
76
33
10
26
29
1.90
69415--69481
30
2.2
30
86
0
89
28
13
25
32
1.93
69525--69566
20
2.1
20
95
0
75
28
7
35
28
1.84
76681--76743
32
2.0
32
90
0
99
22
25
23
28
1.99
76681--76797
32
3.7
32
75
4
83
23
23
24
27
2.00
86053--86087
15
2.2
16
95
5
63
42
20
20
17
1.89

Tables:   1

The End!