genome.fa.s5676.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005676.1 Hibiscus syriacus cultivar Beakdansim tig00013275_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  284150

Tables:   1   2   

This is table  2  of  2  ( 166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264077--264163	20	4.3	20	92	0	138	37	20	19	21	1.94
264191--264273	19	4.7	19	75	17	79	12	16	26	44	1.83
264264--264321	14	3.8	14	75	20	62	8	24	20	46	1.78
264213--264336	33	3.8	33	88	3	155	8	20	24	46	1.78
264424--264803	94	4.1	93	90	1	580	47	17	11	23	1.80
265407--265433	13	2.1	13	100	0	54	40	22	22	14	1.90
267230--267269	18	2.2	19	90	4	64	62	0	7	30	1.23
267320--267366	2	23.5	2	86	0	67	53	4	0	42	1.20
267314--267367	16	3.4	16	92	0	81	55	5	0	38	1.23
267445--267479	16	2.2	16	89	0	52	62	5	14	17	1.49
269014--269182	91	1.8	93	91	2	279	24	24	26	24	2.00
269200--269525	40	7.6	42	73	12	193	26	18	30	24	1.98
269092--269577	130	3.7	129	86	4	636	25	19	29	25	1.98
269093--269577	259	1.9	262	86	4	703	25	19	29	25	1.98
269256--269583	46	7.5	44	73	14	198	26	18	30	25	1.98
269616--269684	28	2.4	28	88	7	95	44	14	11	28	1.80
270430--270555	67	1.9	66	85	8	175	46	10	12	30	1.75
270509--270572	30	2.1	30	91	0	101	39	15	9	35	1.80
270560--270662	52	2.0	53	94	1	181	35	18	13	32	1.90
270659--270782	29	4.4	29	83	7	132	48	15	10	25	1.77
270673--270768	29	3.4	29	87	4	135	46	15	10	27	1.78
270659--270782	57	2.2	54	80	8	133	48	15	10	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271082--271185	36	3.0	36	81	4	124	35	11	20	32	1.88
271078--271201	36	3.5	36	77	8	112	37	12	20	29	1.89
271153--271385	105	2.3	101	85	8	292	37	12	20	30	1.89
271359--271440	36	2.3	36	78	4	94	31	12	19	36	1.89
271359--271453	36	2.6	36	78	3	93	35	11	17	34	1.86
270920--271552	273	2.3	268	85	5	821	38	11	17	31	1.86
271301--271619	167	1.9	166	85	7	441	37	11	17	33	1.86
271504--271660	36	4.3	36	82	7	120	36	12	18	33	1.88
271526--271660	36	3.8	35	83	7	155	34	12	19	34	1.89
272206--272243	4	10.0	4	83	11	53	26	0	23	50	1.50
274076--274146	20	3.1	23	70	22	76	42	11	22	23	1.86
274064--274138	20	3.5	20	70	20	62	37	10	25	26	1.89
274075--274153	26	3.3	25	69	20	78	44	10	21	24	1.83
274060--274155	46	2.1	45	90	1	147	40	9	23	26	1.85
276699--276824	50	2.6	49	85	8	161	34	30	9	26	1.88
278462--278512	2	25.5	2	87	0	75	52	3	0	43	1.19
278456--278506	12	4.1	12	82	9	66	54	5	0	39	1.24
278587--278621	16	2.2	16	89	0	52	62	5	14	17	1.49
279876--279936	14	4.0	14	73	19	50	44	21	22	11	1.84
279857--279947	33	2.8	33	86	0	110	41	23	20	14	1.89
279954--280032	20	3.9	21	85	5	85	12	18	16	51	1.75
280598--280801	20	10.0	21	76	6	154	21	17	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280591--280801	41	5.2	41	87	1	282	21	17	23	37	1.93
281666--281825	80	2.0	80	91	2	259	36	5	22	35	1.78

Tables:   1   2

The End!