genome.fa.s5682.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005682.1 Hibiscus syriacus cultivar Beakdansim tig00013288_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134529

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6633--6664	12	2.7	12	95	0	55	81	0	18	0	0.70
13955--13987	16	2.1	16	100	0	66	42	6	18	33	1.75
16719--16792	23	3.3	23	62	17	57	29	40	1	28	1.65
16689--16789	43	2.3	43	96	1	184	28	40	1	28	1.67
17561--17590	15	2.1	15	93	6	53	0	20	3	76	0.92
20370--20421	16	3.1	17	78	10	63	42	5	13	38	1.68
20413--20491	17	4.5	18	76	10	65	48	10	11	30	1.72
20413--20521	34	3.1	35	76	7	89	47	11	11	29	1.74
21404--21446	20	2.2	20	87	4	61	34	20	23	20	1.96
22950--23024	28	2.7	28	83	8	107	26	4	17	52	1.62
27875--27920	20	2.3	20	85	7	58	36	10	19	32	1.87
31501--31969	234	2.0	234	98	0	911	38	6	10	44	1.64
45061--45103	15	2.9	15	100	0	86	27	4	6	60	1.43
45320--45353	15	2.3	15	100	0	68	23	5	5	64	1.38
45070--45584	250	2.0	250	94	5	895	37	15	12	34	1.84
45719--45836	60	2.0	60	84	0	155	28	21	12	37	1.90
46002--46048	3	16.0	3	84	4	60	34	4	0	61	1.15
46012--46076	26	2.7	24	80	15	80	35	6	0	58	1.23
46012--46077	24	2.7	25	82	13	84	34	6	0	59	1.22
46976--47005	15	2.0	15	100	0	60	40	0	60	0	0.97
46977--47024	20	2.4	20	96	0	87	43	0	56	0	0.99
46978--47024	15	3.1	15	87	0	58	44	0	55	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47682--47719	19	2.1	19	85	5	51	23	5	0	71	1.07
47912--47944	12	2.9	12	86	13	52	42	0	0	57	0.98
48901--48929	14	2.1	14	100	0	58	20	20	10	48	1.79
56178--56221	20	2.2	20	100	0	88	40	18	6	34	1.77
56206--56232	14	1.9	14	100	0	54	37	22	3	37	1.72
59544--59639	20	4.8	20	96	0	174	26	18	20	34	1.96
59698--59740	20	2.2	20	82	0	50	32	16	11	39	1.84
62000--62640	54	11.9	54	89	2	896	26	17	21	34	1.95
62978--63046	20	3.3	20	70	7	66	27	26	11	34	1.91
62978--63058	42	1.9	42	84	0	108	29	23	11	35	1.89
68645--69303	81	8.1	81	88	1	901	35	12	19	33	1.88
75163--75340	94	1.9	95	84	3	243	39	13	21	25	1.90
75314--75368	22	2.5	22	100	0	110	43	23	9	23	1.82
75770--76513	81	9.2	80	88	1	1058	36	11	20	31	1.88
80513--80689	49	3.6	49	92	0	273	25	18	13	42	1.87
80989--81058	17	4.1	17	78	7	79	37	14	4	44	1.65
84839--84905	17	3.9	17	84	0	89	38	13	7	40	1.73
84825--84908	34	2.5	35	80	7	84	38	14	7	40	1.73
86282--86330	19	2.5	20	78	21	59	67	0	8	24	1.18
86743--86781	20	2.0	20	100	0	78	48	5	10	35	1.59
86744--86793	20	2.5	20	90	3	75	48	8	14	30	1.72
88486--88529	18	2.4	18	84	0	52	18	6	34	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93721--93761	22	2.0	21	85	9	57	24	24	24	26	2.00
96866--96921	13	4.3	12	73	22	51	3	14	1	80	0.93
96854--96916	26	2.4	28	84	7	87	4	15	3	76	1.09
103084--103116	7	4.7	7	100	0	66	0	54	0	45	0.99
104826--104960	41	3.3	41	94	2	227	38	24	7	29	1.83
104861--105062	41	4.9	41	87	3	203	34	21	12	31	1.91
104823--105062	82	2.9	82	81	4	245	35	21	11	31	1.89
108162--108206	24	1.9	24	86	4	65	11	26	0	62	1.29
113456--113622	90	1.9	89	93	1	289	37	10	7	44	1.67
114797--114821	11	2.3	11	100	0	50	8	8	32	52	1.60
114814--114918	30	3.5	30	85	2	140	25	25	13	35	1.93
121609--121662	23	2.2	24	87	6	74	9	14	12	62	1.53
124146--124278	46	2.9	45	82	3	158	19	25	10	44	1.83
124311--124919	68	9.0	68	89	1	857	30	23	14	31	1.95
124311--124917	135	4.5	136	86	3	787	30	23	14	31	1.95
124311--124918	203	3.0	204	85	2	841	30	23	14	31	1.95
125131--125387	55	4.7	54	87	3	354	32	20	12	34	1.91
129436--129566	46	2.9	46	83	1	156	21	23	9	45	1.82
129604--130350	68	11.0	68	85	2	928	30	23	13	32	1.94
129604--130350	137	5.5	136	85	2	937	30	23	13	32	1.94
129604--130342	205	3.6	204	85	3	957	30	23	13	32	1.93
130563--130763	55	3.7	55	87	2	289	33	20	12	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130565--130762	110	1.8	109	92	3	335	33	20	12	33	1.90
134340--134527	52	3.6	53	80	9	185	37	10	15	36	1.82

Tables:   1

The End!