Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005689.1 Hibiscus syriacus cultivar Beakdansim tig00013309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81792

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
804--895
23
4.0
23
82
0
112
18
25
23
32
1.97
8136--8213
3
26.3
3
94
2
140
33
1
0
65
1.01
9997--10024
2
14.0
2
100
0
56
50
0
0
50
1.00
10534--10598
24
2.7
24
77
15
71
30
4
0
64
1.14
10530--10596
26
2.6
26
84
13
77
31
2
0
65
1.07
13877--13908
15
2.1
15
100
0
64
25
18
6
50
1.70
22289--22342
22
2.5
22
93
0
90
35
16
11
37
1.84
22289--22351
22
2.9
22
85
4
74
38
14
12
34
1.84
22559--22655
40
2.4
40
96
0
176
46
10
23
19
1.81
22599--22836
122
1.9
124
87
3
347
39
15
19
26
1.91
22599--22878
122
2.3
123
83
5
302
41
15
19
24
1.89
22953--23012
17
3.4
17
68
17
50
51
8
21
18
1.72
23259--23317
3
19.7
3
94
0
91
32
3
1
62
1.21
24820--25097
148
1.9
148
85
4
391
39
6
6
47
1.55
27030--27111
29
2.8
29
94
1
137
32
14
9
42
1.79
28345--28395
24
2.1
24
81
0
57
25
11
49
13
1.76
28400--28429
15
2.0
15
93
0
51
56
23
0
20
1.42
31798--31879
29
2.8
29
94
1
137
32
14
9
42
1.79
37349--37375
6
4.5
6
100
0
54
0
14
51
33
1.43
37480--37705
21
10.8
21
92
0
371
34
22
23
20
1.97
37480--37733
42
6.0
42
91
1
400
34
22
23
20
1.97
37543--37850
42
7.3
42
86
5
225
35
22
21
21
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37477--37876
21
19.0
21
78
8
114
35
21
21
21
1.96
38314--38372
19
2.8
21
80
12
59
42
1
5
50
1.34
46170--46330
64
2.5
65
78
6
159
32
16
24
26
1.96
46299--46347
19
2.6
19
100
0
98
20
10
36
32
1.86
47308--47369
2
31.0
2
87
12
92
50
0
3
46
1.17
47821--47910
46
2.0
46
82
2
110
18
23
23
34
1.96
47851--47910
23
2.6
23
83
0
84
18
26
25
30
1.98
48305--48343
12
3.0
12
85
14
51
38
0
12
48
1.42
49830--49872
13
3.3
13
78
12
52
62
0
0
37
0.95
49948--49989
20
2.1
20
90
0
66
61
2
0
35
1.09
50850--50921
20
3.8
20
76
16
89
66
9
0
23
1.21
54746--54813
23
3.0
23
86
0
91
20
26
26
26
1.99
58007--58049
21
2.0
21
81
0
50
30
30
25
13
1.94
59668--59735
23
3.0
23
82
8
77
20
25
26
27
1.99
62364--62436
19
3.5
19
68
20
56
16
2
27
53
1.57
62346--62441
44
2.2
44
100
0
192
18
2
27
52
1.57
69526--69613
46
1.9
46
88
0
131
29
10
18
42
1.83
76013--76238
89
2.5
89
85
7
314
64
8
7
19
1.44
76018--76229
45
4.8
44
85
6
259
66
8
7
18
1.41
76107--76231
25
5.5
25
63
27
71
68
8
5
17
1.36
76617--76722
21
5.0
21
83
0
131
21
10
36
31
1.87
80133--80258
63
2.0
63
100
0
252
38
28
4
28
1.77

Tables:   1

The End!