Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005711.1 Hibiscus syriacus cultivar Beakdansim tig00013352_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162971

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1451--1577
36
3.6
36
82
1
121
12
10
37
40
1.77
1451--1529
35
2.2
35
88
2
113
16
10
34
39
1.82
1773--1886
30
4.0
29
80
6
133
14
10
55
20
1.68
3650--3711
30
2.0
31
84
3
81
54
4
6
33
1.47
12027--12274
130
1.9
130
91
1
408
36
14
12
36
1.84
12041--12305
130
2.0
129
80
5
293
39
12
13
34
1.82
12602--12664
28
2.3
27
78
8
63
47
1
1
49
1.20
12744--12777
16
2.0
18
88
11
54
64
5
2
26
1.30
12909--12994
35
2.5
35
84
0
100
37
2
20
39
1.66
15073--15118
2
23.0
2
100
0
92
0
50
0
50
1.00
16902--16930
14
2.0
15
93
6
51
13
6
17
62
1.52
27799--27859
2
31.0
2
83
3
79
0
55
0
44
0.99
30213--30246
16
2.0
18
88
11
54
35
2
0
61
1.11
35002--35139
60
2.3
59
82
7
161
35
18
16
29
1.93
35002--35115
60
1.9
60
87
0
165
37
18
15
28
1.92
35459--35490
2
16.0
2
100
0
64
50
0
0
50
1.00
36698--36728
2
15.0
2
93
6
53
48
3
0
48
1.17
37539--37590
25
2.1
25
92
0
86
46
7
7
38
1.61
42331--42388
16
3.6
16
85
0
80
44
6
24
24
1.77
54259--54395
60
2.3
60
83
3
161
32
21
16
30
1.95
54594--54731
60
2.3
61
80
8
149
36
18
13
30
1.90
56852--56917
34
1.9
35
90
3
107
33
25
15
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63931--63963
2
16.5
2
100
0
66
48
0
0
51
1.00
75705--75924
20
10.9
20
85
2
269
47
14
17
20
1.83
75705--75884
41
4.4
41
96
0
317
47
13
16
22
1.81
75705--75934
41
5.7
40
92
2
151
47
14
16
21
1.82
76295--76441
20
7.2
21
87
3
185
21
17
16
45
1.85
76391--76457
20
3.3
20
85
0
98
16
14
26
41
1.87
76370--76457
40
2.2
41
91
2
142
18
15
23
42
1.89
76451--76497
20
2.3
20
85
0
67
23
17
23
36
1.95
76793--76831
21
2.0
20
85
10
53
28
20
20
30
1.98
81036--81062
13
2.1
13
100
0
54
44
14
22
18
1.86
81098--81127
2
15.0
2
92
0
51
46
3
0
50
1.18
90517--90570
21
2.6
21
100
0
108
14
11
25
48
1.77
96597--96657
32
1.9
32
89
0
95
36
8
13
42
1.74
100978--101404
217
2.0
218
95
0
766
33
14
15
37
1.88
124912--124955
21
2.1
21
91
0
70
59
0
4
36
1.18
125548--125582
3
11.7
3
100
0
70
34
0
0
65
0.93
134306--134385
22
3.7
22
73
9
92
51
17
16
15
1.77
136594--136660
33
2.0
33
97
0
125
50
17
25
5
1.69
137195--137224
3
10.0
3
100
0
60
33
33
0
33
1.58
151909--151967
21
3.0
21
70
12
61
47
8
1
42
1.44
152320--152525
68
3.0
68
91
2
342
26
12
13
48
1.77
152406--152514
31
3.3
31
68
22
87
23
12
12
50
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
152383--152493
37
3.2
37
69
23
121
27
12
12
47
1.77
152609--152671
32
2.0
32
96
0
117
25
6
17
50
1.69

Tables:   1

The End!