genome.fa.s5716.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005716.1 Hibiscus syriacus cultivar Beakdansim tig00013366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63063

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2120--2183	30	2.1	30	100	0	128	15	14	12	57	1.65
8916--8944	6	4.8	6	100	0	58	68	0	31	0	0.89
18749--18849	2	55.5	2	72	21	71	53	0	0	44	1.13
18720--18831	34	3.2	34	87	5	152	57	0	0	41	1.11
18730--18850	34	3.4	35	81	11	140	57	0	0	41	1.10
19096--19122	8	3.4	8	100	0	54	55	0	11	33	1.35
19572--19905	156	2.1	157	92	0	553	33	18	14	33	1.91
22457--22516	30	2.0	30	90	6	95	41	5	13	40	1.66
23272--23314	21	2.0	21	90	0	68	32	27	23	16	1.96
23342--23379	20	1.9	20	88	0	58	23	34	31	10	1.89
23993--24054	23	2.7	22	87	2	79	20	25	27	25	1.99
30145--30182	20	1.9	20	88	0	58	23	34	31	10	1.89
30664--30984	103	3.1	103	95	0	597	25	13	23	36	1.92
31001--31063	23	2.7	23	85	4	83	20	25	26	26	1.99
32004--32049	23	1.9	24	83	16	60	41	2	8	47	1.46
33038--33428	84	4.8	84	81	7	444	32	15	18	34	1.91
34956--34996	22	1.9	21	90	5	64	70	4	0	24	1.06
35857--35884	5	5.6	5	100	0	56	21	0	0	78	0.75
38466--38503	20	1.9	19	89	5	58	18	15	21	44	1.86
39047--39081	16	2.1	17	89	5	54	40	0	2	57	1.14
46204--46264	27	2.3	27	94	0	104	40	13	14	31	1.84
48538--48583	18	2.6	18	80	13	67	32	6	4	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60071--60134	28	2.4	26	80	10	74	39	1	1	57	1.17
60239--60311	24	3.1	22	74	20	67	49	0	2	47	1.15

Tables:   1

The End!