genome.fa.s5753.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005753.1 Hibiscus syriacus cultivar Beakdansim tig00013460_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171241

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6165--6203	20	2.0	20	89	0	60	33	20	10	35	1.86
7499--7608	56	2.0	56	90	1	177	51	10	12	25	1.70
9134--9179	21	2.2	21	84	0	56	41	0	2	56	1.11
12790--12843	21	2.6	21	100	0	108	24	25	25	24	2.00
15581--15671	43	2.1	43	89	0	137	26	21	8	42	1.82
17095--17184	23	4.0	23	86	2	128	34	26	15	23	1.95
17095--17184	45	2.0	46	86	2	128	34	26	15	23	1.95
18888--18927	17	2.3	17	86	4	53	20	15	12	52	1.74
18896--18929	17	2.0	17	100	0	68	17	11	17	52	1.73
22999--23028	11	2.7	11	94	0	51	50	0	13	36	1.42
26933--27006	38	1.9	38	83	0	94	54	17	8	20	1.68
30832--30900	30	2.2	30	82	15	86	36	5	17	40	1.74
30841--30900	29	2.0	31	90	6	97	35	6	16	41	1.75
30965--31011	19	2.5	19	89	0	67	38	6	14	40	1.72
31117--31158	21	2.0	21	95	0	75	23	21	28	26	1.99
31442--31511	34	2.1	32	89	5	104	31	15	31	21	1.95
38837--38974	28	5.0	28	76	4	111	11	13	23	52	1.72
38874--38952	27	2.9	26	74	10	61	15	15	18	50	1.78
59316--59377	29	2.1	30	85	14	85	46	3	4	45	1.40
59591--59651	27	2.3	25	76	20	61	50	3	0	45	1.17
59587--59648	30	2.2	27	83	13	72	50	3	0	46	1.17
59609--59652	19	2.3	19	80	7	54	52	4	0	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59958--60009	18	2.9	18	80	5	52	50	5	15	28	1.67
62114--62147	16	2.2	15	89	5	50	55	5	14	23	1.61
63353--63504	80	1.9	78	82	7	191	45	3	7	43	1.49
63353--63504	77	1.9	81	82	7	197	45	3	7	43	1.49
63862--63925	25	2.6	24	83	11	76	56	1	7	34	1.38
64782--64870	37	2.6	34	75	15	85	1	21	5	71	1.12
64816--64851	16	2.3	16	90	4	56	0	25	5	69	1.10
64823--64872	21	2.3	22	89	6	75	0	24	4	72	1.02
64814--64873	15	4.6	14	67	28	51	0	23	6	70	1.11
69081--69292	111	1.9	112	81	8	263	45	13	16	24	1.83
69290--69351	29	2.1	30	87	3	90	50	3	12	33	1.57
69290--69362	29	2.5	29	82	6	76	50	4	12	32	1.59
71755--71813	30	2.0	30	100	0	118	27	20	15	37	1.92
73166--82150	4	2259.5	4	91	2	12773	45	24	3	25	1.70
76183--76239	2	28.5	2	100	0	114	50	49	0	0	1.00
78471--78525	2	27.5	2	100	0	110	50	49	0	0	1.00
82247--82370	2	62.5	2	96	1	232	50	49	0	0	1.06
82475--82519	2	22.5	2	100	0	90	51	48	0	0	1.00
82519--82565	2	23.5	2	100	0	94	51	0	0	48	1.00
82580--82653	4	18.5	4	85	0	85	44	20	6	28	1.76
82582--82664	16	5.2	16	86	0	58	42	20	8	28	1.81
82788--82842	9	6.1	9	79	8	67	43	0	1	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87664--87744	2	40.5	2	97	0	153	50	48	0	1	1.08
88031--88126	8	11.4	8	71	14	50	73	1	21	3	1.03
88033--88083	9	5.8	9	84	13	61	80	0	19	0	0.71
88031--88122	16	5.5	17	70	6	71	75	1	20	3	1.01
88113--88137	13	1.9	13	100	0	50	72	0	28	0	0.86
89845--89960	38	3.1	37	88	3	171	25	22	15	36	1.94
89912--90086	66	2.6	66	88	0	251	26	21	14	38	1.91
90751--91385	132	4.8	132	86	2	770	31	19	18	31	1.96
90751--91347	268	2.2	264	84	4	768	31	19	17	31	1.95
91231--91345	44	2.6	44	76	2	115	32	18	16	33	1.93
91565--91618	3	17.7	3	84	7	65	40	0	0	59	0.98
91564--91616	17	3.1	17	89	8	81	41	0	0	58	0.98
91565--91619	20	2.7	21	86	5	78	41	0	0	58	0.98
94691--94760	31	2.3	31	84	0	86	25	10	12	51	1.71
106119--106182	18	3.3	20	77	18	57	62	0	1	35	1.05
106176--106236	13	4.8	12	74	11	50	60	0	0	39	0.97
106162--106242	40	2.0	41	83	11	105	56	0	1	41	1.07
106183--106242	14	4.4	14	74	18	56	56	0	0	43	0.99
106189--106295	12	8.7	12	72	12	83	59	0	0	40	0.97
106253--106303	12	4.3	12	76	18	54	66	0	0	33	0.92
114644--114669	2	13.0	2	100	0	52	50	0	0	50	1.00
115263--115406	17	8.4	17	75	10	91	36	16	9	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119563--119651	46	1.9	46	86	0	124	23	21	13	41	1.88
119558--119658	46	2.2	46	80	0	121	22	19	13	43	1.87
119661--120220	81	7.1	81	84	5	689	31	20	10	36	1.87
119661--120220	161	3.5	161	85	4	705	31	20	10	36	1.87
119661--120220	242	2.4	230	83	6	687	31	20	10	36	1.87
120035--120166	69	1.9	69	90	0	210	34	19	8	37	1.82
124983--125019	19	1.9	19	94	0	65	32	16	29	21	1.95
132135--132174	18	2.2	18	100	0	80	45	12	5	37	1.64
136235--136267	9	3.8	9	92	4	50	57	0	3	39	1.14
136447--137444	37	26.2	37	69	9	513	25	18	21	34	1.96
136564--137101	116	4.6	116	91	0	817	25	17	21	34	1.96
136912--137254	153	2.2	152	91	2	560	25	19	21	33	1.97
137065--137370	116	2.6	116	91	3	499	24	20	21	33	1.97
136796--137405	269	2.3	269	93	1	1026	25	19	21	33	1.97
137639--137733	42	2.3	41	82	7	120	31	23	22	23	1.98
139869--139909	15	2.9	14	82	10	57	2	26	0	70	0.99
144132--144161	4	7.5	4	100	0	60	76	0	0	23	0.78
146694--146774	12	6.9	12	88	5	94	39	33	11	16	1.83
146695--146762	6	11.3	6	98	0	118	36	33	13	16	1.87
148541--148585	12	3.8	12	81	0	63	48	17	17	15	1.81
151084--151129	18	2.6	18	89	0	65	10	19	52	17	1.74
155286--155336	25	2.0	25	85	7	68	43	5	1	49	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156090--156184	29	3.2	29	93	1	154	29	28	25	16	1.97
157498--157527	14	2.2	14	94	5	53	40	26	3	30	1.72
158298--158395	3	32.3	3	77	2	88	36	0	2	61	1.08
158305--158370	27	2.4	27	97	0	123	37	0	3	59	1.13
158309--158384	21	3.6	21	83	0	98	39	0	2	57	1.12
158308--158397	27	3.5	26	82	10	107	37	0	2	60	1.09
160433--160797	130	2.8	131	88	1	527	33	9	16	40	1.81
164481--164531	23	2.2	24	89	3	77	31	19	33	15	1.93

Tables:   1

The End!