genome.fa.s5758.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005758.1 Hibiscus syriacus cultivar Beakdansim tig00013479_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90565

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9407--9510	35	2.9	36	88	2	165	31	25	19	23	1.98
11414--11456	14	3.1	14	93	0	77	16	20	13	48	1.80
13652--13682	16	2.0	16	93	6	55	32	6	12	48	1.67
13656--13689	17	2.1	16	88	5	50	32	8	11	47	1.71
13750--13840	33	2.8	33	89	1	139	46	15	5	32	1.69
13847--13888	21	2.0	21	95	0	75	52	7	9	30	1.61
30992--31154	15	10.5	15	85	9	211	46	0	1	51	1.11
30992--31155	45	3.5	45	90	6	240	46	0	1	51	1.11
30992--31180	45	4.0	47	87	8	201	45	0	3	50	1.19
31148--31195	22	2.4	18	73	23	51	33	0	14	52	1.42
31204--31907	32	24.7	32	73	20	551	33	0	13	52	1.44
31237--31279	22	2.0	22	95	0	77	34	2	13	48	1.56
31209--31620	54	7.2	54	79	12	441	33	0	13	52	1.44
31291--31333	22	2.0	22	100	0	86	34	0	13	51	1.42
31368--31444	26	3.0	25	75	11	84	27	0	18	54	1.44
31137--31595	224	2.0	225	91	5	739	33	0	13	52	1.46
31259--31925	170	3.9	170	79	13	713	33	0	13	52	1.43
31259--31787	202	2.7	202	90	4	751	33	0	13	52	1.43
31461--31503	22	2.0	22	90	0	68	37	2	11	48	1.52
31506--31562	18	3.4	18	67	18	59	31	0	14	54	1.40
31661--31705	22	2.0	22	100	0	90	37	0	13	48	1.42
31631--31939	54	5.6	54	79	8	370	34	0	13	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31717--31759	22	2.0	22	95	0	77	37	0	13	48	1.43
31313--31787	202	2.4	197	94	3	771	33	0	13	52	1.43
31515--31939	224	1.9	224	98	0	814	33	0	13	52	1.41
31887--31929	22	2.0	22	100	0	86	34	0	13	51	1.42
31954--32012	31	1.9	31	92	0	100	42	10	6	40	1.65
33443--33476	15	2.3	15	89	0	50	23	2	44	29	1.68
33718--33798	33	2.4	33	89	2	117	12	24	19	43	1.86
33770--33878	20	5.4	20	91	2	166	18	22	24	33	1.96
37204--37277	20	3.7	20	92	0	121	24	17	27	31	1.97
37204--37290	20	4.3	20	92	0	120	22	18	26	32	1.97
37277--37410	20	6.7	20	84	1	178	23	19	18	38	1.93
37277--37432	40	3.9	41	82	2	181	25	18	19	36	1.94
40617--40783	90	1.9	89	92	1	280	44	5	8	40	1.60
42180--42206	13	2.1	13	100	0	54	29	14	14	40	1.86
43813--43915	45	2.3	45	91	0	170	33	14	21	30	1.93
45490--45559	34	2.1	32	86	5	95	22	30	15	31	1.95
45776--45815	21	1.9	22	90	10	66	15	10	37	37	1.80
45844--45885	21	2.0	21	95	0	75	26	28	21	23	1.99
46030--46120	31	3.0	31	95	3	159	42	16	6	34	1.74
48385--48494	55	2.0	55	92	0	184	34	9	11	44	1.73
53741--53867	30	4.2	31	81	3	150	43	9	3	43	1.55
53949--54035	38	2.3	38	95	0	156	58	10	8	22	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54461--54530	33	2.2	31	87	5	95	18	27	7	47	1.75
55757--55795	14	2.6	15	88	8	53	28	2	2	66	1.18
55757--55803	16	3.1	14	82	14	58	27	2	4	65	1.22
59190--59276	35	2.5	34	77	18	90	55	9	8	27	1.60
60371--60432	23	2.7	23	84	0	88	27	25	25	20	1.99
61201--61248	19	2.5	19	100	0	96	20	20	22	35	1.96
61282--61335	21	2.6	21	96	0	99	24	16	27	31	1.96
61796--61821	13	2.0	13	100	0	52	76	0	23	0	0.78
68703--68728	13	2.0	13	100	0	52	69	0	30	0	0.89
70803--70854	27	2.0	26	88	3	77	67	1	0	30	1.02
70815--70880	20	3.6	19	76	23	54	65	4	0	30	1.13
72097--72134	2	19.0	2	94	0	67	47	0	0	52	1.00
80394--80477	28	3.0	28	98	0	159	10	30	15	42	1.81
80768--80883	58	2.0	58	89	0	178	25	24	23	26	2.00
84365--84466	32	3.2	33	91	5	165	44	17	7	30	1.77
84461--84502	21	2.0	21	95	0	75	47	7	14	30	1.71

Tables:   1

The End!