genome.fa.s580.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000580.1 Hibiscus syriacus cultivar Beakdansim tig00001132_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  209095

Tables:   1   2   

This is table  1  of  2  ( 146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25419--25470	21	2.5	21	81	3	61	38	19	25	17	1.93
25459--25572	20	5.7	20	79	6	95	32	25	16	25	1.96
25456--25572	61	1.9	61	82	0	144	34	24	16	24	1.95
26124--26165	19	2.2	19	86	0	57	50	28	16	4	1.66
26161--26200	19	2.1	19	95	0	71	12	22	17	47	1.81
28287--28489	42	4.8	42	77	2	176	22	35	18	23	1.95
28423--28489	21	3.2	21	66	6	55	23	35	20	19	1.95
28284--28459	84	2.1	84	94	0	316	21	36	17	23	1.94
28284--28489	84	2.5	84	88	1	270	22	35	18	23	1.95
29967--30025	19	3.4	19	68	22	65	47	16	22	13	1.82
29970--30056	33	2.6	33	90	0	129	45	18	21	13	1.84
30052--30202	19	8.7	19	63	21	71	15	22	19	41	1.90
30056--30182	33	3.9	32	85	8	184	15	22	18	42	1.89
30049--30181	66	2.0	66	95	0	239	17	22	18	41	1.90
31660--31713	24	2.2	24	90	0	81	40	20	16	22	1.91
32460--32508	20	2.5	20	89	0	80	34	18	26	20	1.95
32721--32770	19	2.5	20	96	3	93	32	28	24	16	1.96
32833--32871	20	2.0	20	89	0	60	15	10	28	46	1.78
32954--32990	14	2.6	14	86	0	56	48	21	0	29	1.50
34841--34906	20	3.3	20	82	0	69	42	24	18	15	1.88
34869--34927	20	3.0	20	82	2	75	40	22	22	15	1.90
34900--34964	33	2.0	33	88	11	98	46	21	20	12	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34931--34981	18	2.8	18	81	3	57	43	23	19	13	1.87
34993--35047	14	3.6	14	75	17	56	12	18	23	45	1.83
34976--35047	32	2.2	32	90	2	108	13	18	20	47	1.82
35039--35092	20	2.7	20	85	0	63	22	18	25	33	1.97
35568--35612	18	2.5	18	88	0	72	13	13	46	26	1.80
36931--36974	20	2.2	20	87	0	61	50	20	18	11	1.77
36980--37031	19	2.7	19	100	0	104	9	21	23	46	1.80
37235--37279	23	2.0	23	86	4	65	20	15	44	20	1.87
37468--37519	20	2.6	20	87	0	77	26	21	26	25	1.99
37528--37581	20	2.7	20	97	0	99	25	18	24	31	1.97
37447--37584	61	2.3	61	84	0	186	24	17	23	34	1.96
37447--37602	61	2.6	61	81	2	152	23	19	23	33	1.97
37652--37692	21	2.0	21	85	0	55	34	31	17	17	1.93
41048--41096	21	2.4	20	86	3	62	48	6	2	42	1.39
40986--41088	32	3.2	31	81	11	120	52	5	2	38	1.41
42554--42727	90	1.9	90	82	4	217	39	18	14	28	1.90
44988--45024	19	1.9	19	100	0	74	35	21	16	27	1.94
44992--45035	19	2.3	19	88	0	61	31	22	20	25	1.98
45083--45135	21	2.5	21	87	0	79	20	24	18	35	1.95
45144--45210	20	3.3	20	91	0	107	31	25	19	23	1.98
46297--46333	14	2.6	14	91	4	56	51	21	21	5	1.68
48540--48628	20	4.4	21	81	8	114	37	26	20	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48602--48695	33	2.8	34	90	3	145	42	21	23	12	1.87
48633--48699	20	3.7	19	72	22	72	44	19	22	13	1.85
48710--48786	33	2.3	34	86	2	111	18	22	15	44	1.87
48763--48799	14	2.6	14	91	0	56	16	27	18	37	1.92
48925--48961	14	2.6	14	86	0	56	48	21	0	29	1.50
50793--50844	20	2.6	20	96	0	95	38	19	21	21	1.94
50840--50905	20	3.3	20	93	0	105	21	19	22	36	1.95
50930--50966	14	2.6	14	100	0	74	16	27	16	40	1.89
50958--51009	20	2.6	20	87	0	86	19	17	23	40	1.91
52893--52947	20	2.8	20	85	0	74	49	21	16	12	1.79
52935--53007	33	2.2	34	82	7	87	42	24	17	15	1.88
53334--53392	22	2.7	22	91	0	100	22	13	37	27	1.91
53574--53646	20	3.7	20	92	0	119	20	19	20	39	1.92
56160--56210	20	2.5	20	96	3	93	39	21	17	21	1.93
56336--56383	20	2.4	20	100	0	96	27	16	22	33	1.96
56356--56498	57	2.5	57	93	2	234	27	16	20	34	1.95
59360--59404	23	2.0	23	90	0	72	51	11	2	35	1.50
59779--59819	14	3.1	14	79	10	50	60	0	2	36	1.10
70436--70474	20	2.0	20	85	5	53	43	0	0	56	0.99
72704--72738	14	2.5	14	95	0	61	62	0	11	25	1.28
72901--72941	21	2.0	21	95	0	73	17	24	17	41	1.89
72902--72948	21	2.2	21	88	0	67	21	23	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72938--73030	20	4.7	20	95	0	168	37	22	20	19	1.94
73017--73103	20	4.3	20	89	0	129	31	26	19	22	1.98
73999--74089	20	4.5	21	89	8	145	34	26	23	16	1.95
73999--74093	40	2.4	39	92	5	163	34	25	22	17	1.96
74097--74167	20	3.9	19	75	19	80	11	22	18	47	1.80
74102--74197	33	2.9	34	90	3	149	12	21	20	44	1.85
74124--74177	14	3.5	14	75	22	54	11	22	20	46	1.82
74162--74201	20	2.0	20	95	0	71	15	20	22	42	1.88
74303--74339	14	2.6	14	86	0	56	48	21	0	29	1.50
78931--78970	21	1.9	21	89	0	62	10	25	40	25	1.86
78953--79012	19	2.9	20	85	9	68	16	26	35	21	1.95
85924--86054	20	6.8	20	79	13	148	38	22	20	18	1.94
86051--86129	33	2.4	34	80	2	88	12	20	22	44	1.85
86101--86152	20	2.6	20	96	0	95	17	19	25	38	1.93
88415--88479	22	3.0	22	90	0	103	21	13	40	24	1.90
88700--88752	21	2.5	21	81	0	70	33	18	26	20	1.96
91926--91983	2	29.5	2	96	3	109	50	0	0	50	1.00
92051--92298	126	2.0	125	89	4	383	24	26	22	27	2.00
110186--110246	2	30.5	2	100	0	122	49	0	0	50	1.00
115061--115621	51	10.8	51	88	4	678	28	27	15	28	1.96
116756--116860	15	7.5	14	75	19	85	7	14	0	78	0.96
116756--116865	34	3.2	33	80	11	123	8	13	0	78	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116761--116857	17	6.2	16	73	17	71	6	15	0	78	0.94
116776--116865	43	2.1	41	86	10	119	7	13	0	78	0.94
116776--116857	27	3.1	27	81	16	100	6	14	0	79	0.92
116776--116857	12	6.1	13	73	21	55	6	14	0	79	0.92
116776--116874	53	1.9	52	82	12	123	8	14	0	77	0.97
129905--129985	42	1.9	42	92	0	135	18	28	20	32	1.97
159275--159308	13	2.6	13	100	0	68	23	26	5	44	1.76
164169--164250	39	2.1	39	77	4	94	36	14	3	45	1.63
164515--164618	32	2.9	36	78	17	101	51	0	3	43	1.26
165070--165163	47	2.0	47	91	8	154	51	2	3	43	1.29
165965--165995	16	1.9	16	93	0	53	54	16	9	19	1.68
167549--167574	12	2.2	12	100	0	52	50	30	0	19	1.48
169071--169095	9	2.8	9	100	0	50	92	0	0	8	0.40
169265--169307	22	2.0	22	86	9	61	76	2	2	18	1.00
169264--169293	13	2.2	14	94	5	53	76	3	0	20	0.92
169264--169296	14	2.4	14	90	10	50	75	3	0	21	0.93
170456--170514	30	1.9	31	86	3	84	69	1	5	23	1.18
170577--170615	19	2.1	18	85	4	51	53	7	0	38	1.30
170604--170664	13	4.9	13	68	24	51	50	9	0	39	1.35
170586--170706	32	3.6	33	87	8	165	50	7	0	41	1.36
170774--170798	13	1.9	13	100	0	50	52	8	0	40	1.31
170733--170853	33	3.7	32	74	16	104	51	7	0	40	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170696--170860	67	2.5	64	75	15	145	47	6	3	41	1.47
171499--172240	84	8.9	83	80	6	743	25	20	22	31	1.98
171425--172282	164	5.2	165	81	6	758	25	20	23	31	1.98
171489--172260	249	3.1	249	91	1	1208	25	20	23	31	1.98
175589--175633	19	2.4	19	92	3	74	66	8	13	11	1.44
177417--177476	10	5.5	10	77	13	57	80	6	3	10	1.01
177619--177648	13	2.2	14	94	5	53	76	3	0	20	0.92
178700--178730	16	2.0	15	93	6	53	12	25	41	19	1.87
179002--179044	22	2.0	22	86	4	61	51	6	0	41	1.29
179005--179317	34	8.8	36	76	12	258	48	7	2	41	1.44

Tables:   1   2