Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000580.1 Hibiscus syriacus cultivar Beakdansim tig00001132_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  209095

Tables:   1   2   

This is table  2  of  2  ( 146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
179210--179234
13
1.9
13
100
0
50
52
8
0
40
1.31
179704--179798
46
2.1
46
95
0
172
35
12
22
29
1.91
184425--184483
31
1.9
31
85
0
82
38
5
10
45
1.60
184508--184550
22
2.0
22
90
0
68
53
11
0
34
1.37
184498--184798
54
5.5
54
77
15
332
53
11
0
35
1.37
184632--184685
14
3.6
14
72
18
54
57
5
0
37
1.22
184728--184770
22
2.0
22
100
0
86
51
13
0
34
1.42
184730--184778
22
2.2
22
85
3
62
57
14
0
28
1.38
184772--184825
14
3.6
14
72
18
54
57
5
0
37
1.22
184814--184858
22
2.0
22
100
0
90
48
13
0
37
1.42
184782--185157
54
6.9
54
81
11
473
52
11
0
35
1.39
184812--184910
22
5.1
20
72
23
79
51
11
0
37
1.38
184812--184864
22
2.4
22
90
6
81
52
11
0
35
1.37
184870--184918
22
2.2
22
85
3
62
55
12
0
32
1.37
184970--185162
32
6.7
32
73
23
185
52
10
0
36
1.41
184992--185045
14
3.6
14
72
18
54
57
5
0
37
1.22
185034--185078
22
2.0
22
100
0
90
48
13
0
37
1.42
185032--185125
22
4.9
20
72
25
71
51
10
1
37
1.44
185032--185084
22
2.4
22
90
6
81
52
11
0
35
1.37
185212--185344
15
8.5
15
84
11
169
51
2
0
45
1.13
185255--185387
30
4.4
30
81
7
162
47
2
0
50
1.13
185255--185387
45
2.9
45
86
6
171
47
2
0
50
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
186879--186929
14
3.8
14
85
10
63
49
0
0
50
1.00
187411--187481
31
2.3
30
83
7
97
54
1
9
33
1.42
187418--187478
32
1.9
31
90
3
95
50
1
11
36
1.48
202266--202293
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1   2

The End!