genome.fa.s5813.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005813.1 Hibiscus syriacus cultivar Beakdansim tig00013626_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99247

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14--60	2	24.0	2	91	4	78	48	0	0	51	1.00
33--129	12	7.6	12	72	15	52	36	3	12	48	1.57
123--171	22	2.3	21	86	10	73	53	2	8	36	1.43
123--220	24	4.0	25	71	18	71	51	2	9	37	1.46
185--220	18	2.1	17	94	5	63	50	0	11	38	1.38
970--1037	21	3.2	21	83	4	84	14	25	8	51	1.71
1379--1408	14	2.1	14	93	0	51	3	0	13	83	0.77
3776--3820	21	2.1	21	100	0	90	17	4	33	44	1.69
3781--3828	21	2.3	21	92	0	78	20	8	33	37	1.83
8781--8810	3	10.0	3	100	0	60	66	0	0	33	0.92
8809--8837	3	9.7	3	100	0	58	34	0	0	65	0.93
9122--9151	16	1.9	16	93	6	53	53	3	0	43	1.17
10460--10521	31	2.0	31	96	0	115	35	8	25	30	1.85
14213--14259	24	1.9	25	86	4	69	38	10	21	29	1.87
14673--14713	21	2.0	21	85	9	57	24	0	4	70	1.06
17912--17976	29	2.2	29	88	0	103	35	9	27	27	1.87
18096--18137	22	1.9	22	85	9	59	54	0	9	35	1.33
30445--30502	3	20.0	3	76	13	59	67	1	3	27	1.17
30447--30508	31	2.0	30	87	6	79	66	3	4	25	1.27
30454--30508	26	2.2	25	93	3	92	65	3	5	25	1.31
30660--31122	43	10.9	43	73	12	280	26	19	30	23	1.98
30702--30856	40	3.8	40	78	5	184	29	18	30	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30667--30870	83	2.5	83	94	1	347	29	18	29	22	1.97
30853--31066	46	4.9	45	75	12	198	24	19	31	24	1.98
30770--31125	128	2.8	128	87	4	529	25	18	31	24	1.98
30825--30991	82	2.0	84	85	7	230	25	19	29	24	1.98
31479--31594	37	3.3	36	67	24	104	44	12	12	30	1.79
31405--31628	67	3.4	65	85	6	276	45	13	11	29	1.79
31583--31647	28	2.3	28	92	5	105	47	18	6	27	1.72
31627--31732	55	2.0	55	86	3	153	39	15	15	30	1.87
31728--31849	28	4.5	25	81	9	100	48	13	9	27	1.75
31743--31842	28	3.7	27	84	7	123	47	15	9	29	1.75
32123--32191	36	1.9	35	85	8	95	34	11	20	33	1.89
32090--32201	36	3.2	36	78	12	94	34	14	20	30	1.92
39837--39894	3	20.0	3	76	13	59	67	1	3	27	1.17
39839--39900	31	2.0	30	87	6	79	66	3	4	25	1.27
39846--39900	26	2.2	25	93	3	92	65	3	5	25	1.31
53218--53299	17	4.9	17	76	19	75	68	0	0	31	0.90
53223--53293	3	23.3	3	76	18	67	67	0	0	32	0.91
53234--53290	21	2.8	21	94	2	98	70	0	0	29	0.88
53462--53693	43	5.5	43	75	13	155	23	19	32	24	1.97
53504--53709	46	4.9	43	76	15	182	21	20	33	24	1.97
53504--53703	40	4.8	41	77	13	171	22	19	34	24	1.96
53821--54002	100	1.8	101	84	1	249	37	12	14	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54489--54567	27	2.9	27	92	3	131	48	16	8	26	1.75
54454--54574	27	4.3	27	84	5	125	48	13	13	24	1.78
54816--54919	36	3.0	36	81	4	124	35	11	20	32	1.88
55423--55468	4	12.2	4	82	13	62	26	0	21	52	1.47
55425--55460	18	2.1	17	94	5	63	25	0	22	52	1.47
62983--63052	3	22.3	3	75	18	63	67	0	0	32	0.91
62983--63049	21	3.2	21	84	16	86	67	0	0	32	0.91
62978--63059	23	3.4	23	84	15	105	68	0	0	31	0.90
62969--63043	15	5.1	15	71	27	63	66	0	1	32	1.00
73742--73829	44	2.0	44	100	0	176	29	22	15	31	1.95
76513--76557	21	2.1	21	87	0	63	31	28	24	15	1.96
77901--78215	149	2.1	149	98	1	605	26	18	21	33	1.96
78183--78227	23	2.0	23	90	0	72	22	26	26	24	2.00
81100--81150	19	2.7	19	90	0	75	33	13	5	47	1.67
82179--82219	14	3.1	14	76	20	52	51	4	0	43	1.23
82179--82229	25	2.0	26	88	3	77	50	3	1	43	1.31
84228--84494	86	3.1	86	66	26	236	45	7	6	40	1.58
84193--84542	175	2.0	175	96	1	639	44	6	6	42	1.56
86110--86146	12	3.1	12	96	0	65	62	5	0	32	1.18
89087--89114	13	2.2	13	100	0	56	21	14	14	50	1.78
93770--93860	46	2.0	46	91	0	146	25	23	15	36	1.94
94382--94488	56	1.9	56	94	0	187	25	19	15	39	1.91

Tables:   1

The End!