genome.fa.s5860.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005860.1 Hibiscus syriacus cultivar Beakdansim tig00013773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  375081

Tables:   1   2   

This is table  2  of  2  ( 187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235830--235859	2	15.0	2	100	0	60	50	0	50	0	1.00
239719--239834	23	4.8	25	72	14	84	52	0	2	43	1.20
239871--239909	18	2.1	19	85	4	53	23	5	0	71	1.05
239908--239958	26	1.9	27	84	4	68	54	1	3	39	1.30
240091--240180	39	2.3	39	77	11	103	44	2	16	36	1.60
240205--240234	13	2.2	14	94	5	53	83	13	3	0	0.77
240498--240556	31	1.9	31	85	0	82	28	20	18	32	1.96
241341--241385	23	2.0	23	86	0	63	26	28	24	20	1.99
241364--241668	149	2.0	149	98	0	583	33	21	17	27	1.95
243170--243214	21	2.1	21	87	0	63	15	24	28	31	1.96
246469--246513	23	2.0	23	86	0	63	26	28	24	20	1.99
246492--246795	149	2.0	148	98	0	581	34	21	16	27	1.95
247262--247291	2	15.0	2	100	0	60	50	0	0	50	1.00
248307--248351	21	2.1	21	87	0	63	15	24	28	31	1.96
251556--251586	16	1.9	16	100	0	62	32	0	12	54	1.38
251790--251825	8	4.5	8	89	0	54	41	8	0	50	1.33
258259--258305	20	2.5	19	86	6	60	36	17	21	25	1.94
258525--258587	29	2.2	29	97	0	117	34	12	19	33	1.89
259987--260016	14	2.1	14	100	0	60	30	13	13	43	1.82
263763--264062	150	2.0	150	98	0	573	30	17	9	43	1.80
268033--268091	30	2.0	30	93	0	100	25	23	16	33	1.96
270274--270299	12	2.2	12	100	0	52	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276778--276826	20	2.5	20	93	0	80	8	26	28	36	1.85
276766--276826	11	5.9	11	72	14	58	9	26	27	36	1.88
277374--277417	23	1.9	23	100	0	88	52	0	13	34	1.41
284127--284187	31	2.0	31	87	6	88	21	19	26	32	1.97
292560--292618	31	1.9	31	89	6	93	42	3	8	45	1.51
292645--292693	22	2.2	22	85	3	62	55	14	2	28	1.51
292633--293379	54	13.8	54	75	14	621	52	12	0	34	1.43
292648--292797	80	1.9	80	92	0	255	52	12	1	34	1.47
292745--293417	32	23.2	32	66	27	245	52	12	0	34	1.42
292633--293257	134	4.6	134	86	7	858	52	12	0	33	1.44
292779--292827	22	2.2	22	85	3	62	55	12	0	32	1.37
292782--292931	80	1.9	80	97	0	282	53	13	0	32	1.45
292911--292953	22	2.0	22	95	0	77	53	11	0	34	1.37
292913--292961	22	2.2	22	85	3	62	57	12	0	30	1.36
292879--293311	80	5.3	81	80	13	469	52	13	0	33	1.44
293047--293121	22	3.2	23	75	17	82	54	17	0	28	1.43
292633--293367	112	6.8	108	71	21	506	52	12	0	34	1.44
293116--293162	22	2.1	22	88	7	69	57	4	0	38	1.18
293125--293167	22	2.0	22	95	0	77	53	6	0	39	1.28
293127--293175	22	2.2	22	85	3	62	57	8	0	34	1.29
293237--293279	22	2.0	22	95	0	77	48	13	0	37	1.43
293239--293287	22	2.2	22	85	3	62	53	14	0	32	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293291--293333	22	2.0	22	100	0	86	51	13	0	34	1.42
293309--293398	33	2.6	33	86	8	110	53	8	0	37	1.32
294114--294143	2	15.0	2	100	0	60	50	0	0	50	1.00
294882--294929	21	2.2	23	88	7	73	50	0	18	31	1.48
295586--295629	23	1.9	23	95	0	79	40	2	2	54	1.25
318947--319017	29	2.4	29	97	0	133	40	26	8	23	1.83
322661--322697	20	1.9	19	89	10	58	45	10	24	18	1.81
323223--323289	29	2.3	29	97	0	125	40	14	29	14	1.87
323464--323545	41	1.9	41	85	7	110	42	4	10	41	1.61
331336--331369	12	2.8	12	86	0	50	0	23	2	73	0.97
349780--349809	4	7.5	4	100	0	60	76	0	0	23	0.78
350676--350783	32	3.5	31	86	9	141	27	45	14	12	1.81
350704--350783	29	2.7	29	84	9	99	27	42	16	13	1.86
354146--354185	21	1.9	21	89	0	62	17	27	35	20	1.95
356134--356174	3	14.0	3	87	5	57	0	29	2	68	1.03
357554--357635	19	4.1	20	75	12	78	15	25	34	24	1.95
357574--357635	21	3.0	21	79	11	74	14	25	33	25	1.94
357954--358046	31	2.9	32	79	6	109	25	19	23	31	1.98
360457--360676	105	2.1	104	94	1	379	25	14	23	36	1.92
366236--366453	103	2.1	103	94	0	391	26	14	23	36	1.93
366460--366537	23	3.3	23	80	1	84	25	16	23	34	1.95
368041--368154	35	3.3	35	84	0	138	42	20	0	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369919--370030	35	3.2	35	83	5	136	36	0	21	41	1.60

Tables:   1   2

The End!