genome.fa.s5883.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005883.1 Hibiscus syriacus cultivar Beakdansim tig00013816_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183212

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4219--4288	36	1.9	36	82	5	88	58	2	1	37	1.22
4802--4864	30	2.1	30	90	0	99	50	12	3	33	1.56
11996--12096	51	2.0	51	88	7	152	30	17	17	33	1.94
13073--13119	18	2.6	18	83	6	60	42	0	0	57	0.98
18494--18555	31	2.0	32	87	3	90	48	0	1	50	1.10
18507--18570	33	1.9	33	84	6	85	53	0	0	46	1.00
27665--27703	17	2.3	17	83	12	53	58	0	38	2	1.12
29901--29933	16	2.2	15	89	10	50	48	30	0	21	1.50
38759--38788	13	2.2	14	94	5	53	50	3	0	46	1.18
39800--39837	18	2.1	18	95	0	67	31	10	18	39	1.85
39806--39850	18	2.4	18	85	3	54	31	13	22	33	1.92
43121--43690	268	2.2	260	86	8	826	26	12	20	40	1.88
46894--46998	55	1.9	55	98	0	201	22	11	23	41	1.86
50153--50503	176	2.0	176	89	0	531	37	18	15	28	1.92
52435--52460	2	13.0	2	100	0	52	50	0	0	50	1.00
61411--61454	19	2.2	20	88	4	63	13	22	40	22	1.89
62801--62974	87	2.0	87	100	0	348	22	24	24	28	1.99
65889--65925	18	2.1	18	100	0	74	32	10	24	32	1.90
67096--67177	21	4.0	21	77	3	103	20	17	28	34	1.95
67104--67200	41	2.4	41	96	0	185	15	19	27	37	1.92
67125--67197	20	3.6	20	74	3	83	13	21	24	39	1.90
75435--75494	29	2.0	32	84	15	83	30	5	6	58	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75483--75536	16	3.7	16	76	23	73	27	0	0	72	0.85
75479--75550	27	2.6	27	95	2	126	29	0	1	69	0.97
75483--75538	15	3.9	15	79	15	73	30	0	0	69	0.89
82339--82459	60	2.0	59	88	1	179	22	18	20	38	1.93
83481--83547	29	2.3	29	89	0	98	47	22	20	8	1.78
84364--84420	27	2.1	27	86	0	78	7	38	12	42	1.70
90966--91018	20	2.7	20	91	5	81	43	24	18	13	1.86
91027--91077	21	2.5	21	90	3	86	35	27	19	17	1.94
91027--91088	20	3.0	20	81	11	72	38	25	17	17	1.92
91536--91718	20	9.1	20	80	3	188	38	25	16	19	1.93
91967--92063	19	5.6	18	71	22	84	11	23	19	45	1.83
91947--92063	33	3.4	34	86	8	148	13	24	18	42	1.87
91970--92063	33	2.8	33	95	0	161	11	23	19	45	1.83
92013--92063	17	3.1	17	74	25	63	13	21	17	47	1.82
93855--94076	94	2.4	93	90	1	345	46	18	11	23	1.81
95739--95850	33	3.0	38	73	18	119	44	18	25	11	1.83
95739--95851	19	6.1	19	77	13	110	45	18	24	11	1.83
95871--95914	21	2.1	21	91	0	70	11	22	15	50	1.76
96039--96109	20	3.5	19	80	5	79	53	18	15	12	1.73
96142--96196	20	2.8	20	83	2	76	14	18	20	47	1.83
97864--98020	82	1.9	82	93	0	269	26	12	15	45	1.82
98346--98412	21	3.2	21	68	4	55	25	35	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98324--98412	42	2.1	42	83	8	110	24	34	19	21	1.96
101513--101545	12	2.8	12	90	0	57	3	24	0	72	0.98
101720--101773	24	2.2	24	93	0	90	40	20	18	20	1.91
101944--102008	31	2.1	31	97	0	121	33	6	26	33	1.81
102681--102720	21	1.9	21	89	0	62	42	17	22	17	1.89
103685--103764	4	20.0	4	84	0	88	40	0	8	51	1.33
103685--103764	6	13.3	6	90	0	88	40	0	8	51	1.33
111645--111700	16	3.5	17	75	15	57	50	1	0	48	1.11
111716--111776	26	2.2	29	80	8	74	49	1	1	47	1.21
111831--111876	19	2.4	19	85	7	58	45	0	2	52	1.13
111837--111898	30	2.2	27	83	13	72	46	1	3	48	1.28
117680--118128	229	2.0	227	93	0	772	44	7	7	39	1.61
118194--118239	20	2.3	19	89	10	74	54	10	17	17	1.70
118361--118406	20	2.3	20	86	13	69	54	10	17	17	1.70
120633--120697	21	3.1	21	80	6	69	40	15	29	15	1.88
120730--120795	33	2.0	33	90	0	105	28	0	48	22	1.51
122577--122625	19	2.6	19	93	0	80	30	2	10	57	1.43
122744--123443	199	3.6	199	94	4	1165	37	16	15	30	1.90
123111--123443	178	1.9	178	97	0	630	36	16	15	30	1.90
124610--124696	45	1.9	45	86	6	122	41	14	9	34	1.78
125758--125800	20	2.2	20	86	0	59	30	13	20	34	1.92
133977--134450	194	2.5	193	78	6	472	37	13	10	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136836--136868	16	2.1	16	88	5	50	57	3	0	39	1.14
142500--142531	10	3.1	11	82	17	50	21	0	0	78	0.76
148582--148624	14	2.9	14	86	6	50	34	0	4	60	1.17
148600--148627	7	4.0	7	100	0	56	28	0	0	71	0.86
148768--148854	45	1.9	45	83	6	113	41	13	9	35	1.77
149915--149957	20	2.2	20	86	0	59	30	13	20	34	1.92
158152--158625	194	2.5	193	78	7	458	37	12	10	39	1.76
160995--161027	16	2.1	16	88	5	50	57	3	0	39	1.14
162184--162211	12	2.3	12	100	0	56	85	0	0	14	0.59
168320--168346	12	2.2	12	100	0	54	33	7	7	51	1.58
168519--168546	2	14.0	2	100	0	56	50	0	0	50	1.00
170648--170677	15	2.1	15	93	6	53	53	0	6	40	1.27
172731--172869	43	3.2	41	81	11	136	25	17	27	29	1.97
172746--172975	43	5.3	43	78	6	182	25	19	25	30	1.98
172791--172958	86	2.0	86	82	0	210	20	19	25	34	1.96
172773--173000	86	2.7	86	76	6	196	22	18	25	32	1.97
174741--174787	22	2.1	22	100	0	94	51	12	19	17	1.77
176678--176981	84	3.8	81	84	8	363	33	18	20	27	1.96
176678--177003	42	8.0	41	78	11	325	34	18	19	27	1.96

Tables:   1

The End!