genome.fa.s5887.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005887.1 Hibiscus syriacus cultivar Beakdansim tig00013825_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63213

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1752--1988	114	2.1	113	86	6	325	37	16	13	32	1.88
1866--2446	179	3.2	181	93	3	953	33	16	13	35	1.89
3409--3462	3	18.0	3	84	0	72	25	33	3	37	1.74
3410--3479	12	5.8	12	91	0	86	22	32	5	38	1.78
5206--5243	19	2.0	20	94	5	69	21	15	18	44	1.86
4904--5582	200	3.4	200	94	1	1184	31	19	13	35	1.91
5648--5694	20	2.4	19	79	10	58	21	17	8	53	1.70
5828--5874	20	2.4	19	79	10	58	21	17	8	53	1.70
5615--6084	180	2.6	179	89	1	690	27	16	13	42	1.85
6757--6812	29	1.9	29	96	0	103	46	12	14	26	1.80
8953--8993	21	2.0	21	90	0	64	34	29	17	19	1.94
13797--13835	14	2.8	14	84	7	53	2	12	10	74	1.17
13850--14339	242	2.0	243	96	0	910	22	16	20	40	1.91
16355--16658	125	2.5	121	84	6	359	25	21	14	38	1.91
16669--17650	73	13.5	73	88	1	1450	40	11	16	31	1.84
16835--17537	36	19.3	37	64	12	263	39	11	17	31	1.85
16835--17688	36	23.4	37	61	9	158	39	11	17	31	1.85
19937--20077	71	2.0	72	91	1	230	36	16	19	28	1.93
21278--22084	73	11.1	73	88	2	1167	40	10	17	31	1.84
21771--22122	36	9.6	37	66	5	178	39	10	17	32	1.84
21278--22084	220	3.7	219	90	2	1194	40	10	17	31	1.84
24365--24505	71	2.0	72	94	1	248	36	17	19	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27652--27696	18	2.4	18	92	3	72	60	15	6	17	1.56
29775--29896	59	2.0	60	80	7	133	38	16	10	34	1.83
30687--30717	2	15.5	2	93	0	53	51	3	0	45	1.17
30865--30904	13	3.2	13	82	7	55	22	50	12	15	1.77
30934--30998	24	2.6	26	79	16	75	55	0	0	44	0.99
30952--30991	19	2.1	19	85	0	53	55	0	0	45	0.99
30996--31061	12	5.6	12	87	3	89	25	48	15	10	1.77
30996--31061	23	2.8	24	83	4	89	25	48	15	10	1.77
36613--36662	18	2.7	20	79	14	54	32	0	0	68	0.90
43132--43243	35	3.2	35	84	0	143	41	21	0	36	1.60
43239--43313	35	2.1	35	82	4	89	37	0	18	44	1.50
54449--54586	49	2.9	48	91	2	231	29	31	15	23	1.95
55140--55183	20	2.0	20	83	12	52	40	13	2	43	1.57
57428--57533	33	3.1	34	78	15	87	34	0	3	61	1.14
57460--57538	34	2.4	34	85	8	101	37	0	1	60	1.05
59301--59394	21	4.5	21	92	5	129	18	35	26	20	1.95
59913--60016	34	3.1	34	83	2	129	57	4	1	35	1.31
59912--60017	33	3.2	31	80	12	113	56	4	1	36	1.31
60405--61029	128	4.9	128	93	1	1073	32	19	24	23	1.97
61100--61140	8	5.2	8	82	5	57	36	29	0	34	1.58

Tables:   1

The End!