genome.fa.s5888.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005888.1 Hibiscus syriacus cultivar Beakdansim tig00013826_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80335

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993--1042	23	2.3	23	82	6	59	22	40	20	18	1.92
1025--1062	20	1.9	20	88	0	58	26	36	26	10	1.89
7292--7380	20	4.4	20	86	8	119	35	25	20	17	1.95
7292--7380	40	2.2	40	92	4	144	35	25	20	17	1.95
7372--7425	14	3.5	14	73	22	54	44	20	24	11	1.83
7352--7447	33	2.9	34	89	6	142	43	20	21	13	1.86
7716--7784	20	3.5	20	91	0	111	36	24	20	18	1.95
7829--7892	20	3.2	20	93	0	101	20	20	21	37	1.94
7860--7959	33	3.0	34	72	8	96	15	19	20	46	1.85
9806--9875	20	3.5	20	90	0	86	41	25	17	15	1.89
9805--9918	33	3.2	33	73	17	95	43	24	18	13	1.85
10243--10307	22	3.0	22	90	0	103	21	13	40	24	1.90
10506--10599	20	4.7	20	94	0	161	21	20	20	38	1.94
29331--29440	24	4.6	24	74	10	93	47	17	14	20	1.83
29339--29423	12	7.3	11	70	17	55	48	17	14	20	1.81
31834--31880	10	5.5	8	82	14	51	23	25	36	14	1.93
37321--37486	52	3.3	52	94	4	279	43	0	6	50	1.27
37405--37522	22	5.2	22	74	6	119	38	0	10	51	1.36
37262--37460	15	12.4	15	79	14	211	46	0	3	50	1.16
37536--37671	32	4.6	32	80	17	193	34	0	12	52	1.45
37569--37703	54	2.5	54	98	0	261	36	0	10	52	1.41
37556--37612	18	3.4	18	67	18	59	31	0	14	54	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38625--38654	14	2.1	15	93	6	53	43	0	0	56	0.99
39469--39516	19	2.5	19	83	6	62	62	0	2	35	1.07
45322--45362	10	4.1	10	84	12	57	31	29	0	39	1.57
45486--45707	111	2.0	111	95	0	399	35	8	11	45	1.70
50403--50809	189	2.1	190	82	5	500	40	6	9	43	1.62
55949--56033	35	2.5	33	78	14	91	27	8	10	54	1.63
59627--59715	40	2.2	40	95	0	160	12	35	31	20	1.89
61162--61222	26	2.3	26	91	0	95	44	29	4	21	1.73
63397--63433	19	1.9	19	88	0	56	32	18	27	21	1.97
67686--67743	14	4.1	14	77	2	62	25	0	10	63	1.26
70373--70398	13	2.0	13	100	0	52	23	7	0	69	1.14
71444--71505	29	2.1	30	87	3	90	45	19	20	14	1.85
71992--73306	227	5.5	239	77	11	1081	43	13	10	31	1.79
72893--72921	14	2.1	14	100	0	58	31	13	13	41	1.84
71992--73410	236	5.9	236	75	11	923	43	13	10	31	1.79

Tables:   1

The End!