Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005894.1 Hibiscus syriacus cultivar Beakdansim tig00013836_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73627

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110--165
21
2.7
21
86
13
73
69
0
0
30
0.89
5884--6287
202
2.0
202
98
0
772
28
13
27
29
1.94
27784--27843
29
2.0
31
90
6
97
35
6
16
41
1.75
27908--27973
19
3.5
19
85
8
89
40
9
13
36
1.76
28080--28122
22
2.0
22
90
4
70
23
20
30
25
1.99
29281--29405
31
4.0
31
91
2
198
36
21
20
21
1.95
29581--29627
23
2.0
24
91
4
78
34
21
0
44
1.52
30137--30180
21
2.1
21
86
0
61
15
25
27
31
1.96
33168--33292
31
4.0
31
91
2
198
36
21
20
21
1.95
33470--33516
23
2.0
24
91
4
78
34
21
0
44
1.52
34028--34071
21
2.1
21
86
0
61
15
25
27
31
1.96
35958--35998
2
20.5
2
100
0
82
51
0
0
48
1.00
39691--39726
2
18.0
2
100
0
72
50
0
0
50
1.00
49187--49266
35
2.3
35
91
4
126
42
22
1
33
1.62
49187--49282
35
2.7
35
83
3
95
40
27
2
30
1.68
49437--49723
148
2.0
142
90
4
448
35
6
9
48
1.62
50205--50300
35
2.7
35
85
6
115
28
2
27
42
1.67
51670--51708
19
2.1
19
90
0
60
51
5
17
25
1.66
53688--53712
2
12.5
2
100
0
50
52
0
0
48
1.00
53738--53801
33
2.0
32
90
3
101
26
6
6
60
1.44
54267--54306
20
2.0
20
95
0
71
42
20
7
30
1.79
54437--54467
14
2.2
14
100
0
62
74
0
0
25
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55070--55119
24
2.1
24
84
0
64
32
12
4
52
1.57
61867--61904
11
3.5
11
86
10
51
44
0
0
55
0.99
66378--66669
84
3.5
84
83
4
333
29
25
20
25
1.99
66789--66845
15
3.5
15
71
17
51
22
26
15
35
1.94
66865--66949
35
2.4
35
86
2
107
25
21
14
38
1.91
66780--67038
99
2.6
100
92
3
418
28
22
13
36
1.91
66964--67028
34
1.9
34
83
0
85
21
23
13
41
1.89
67099--67958
106
8.4
106
91
4
1272
33
25
18
22
1.97
67099--67958
211
4.2
211
89
5
1277
33
25
18
22
1.97
67630--67885
43
5.6
43
66
17
129
34
26
17
21
1.96
70813--70845
2
16.5
2
100
0
66
48
0
0
51
1.00
71126--71190
34
1.9
34
81
12
80
63
3
3
30
1.25
72915--73215
119
2.5
120
85
10
395
23
18
14
42
1.88
73155--73627
253
1.9
254
93
3
819
30
14
12
41
1.84

Tables:   1

The End!