genome.fa.s5908.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005908.1 Hibiscus syriacus cultivar Beakdansim tig00013878_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95480

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379--445	21	3.2	21	68	4	55	19	20	35	23	1.95
379--501	42	2.9	41	80	7	113	22	17	36	22	1.95
2494--2628	33	4.0	33	85	7	155	40	21	25	12	1.88
2469--2650	19	10.1	19	74	15	154	42	19	24	13	1.87
2646--2712	19	3.5	19	83	2	80	10	16	23	49	1.77
3226--3319	20	4.7	20	80	2	89	23	18	24	34	1.96
3247--3378	41	3.2	41	80	4	124	19	21	20	37	1.94
3308--3400	20	4.6	20	75	4	87	19	24	17	38	1.92
3308--3403	41	2.3	41	96	0	174	19	23	16	39	1.92
9326--9359	16	2.1	17	94	5	61	35	20	8	35	1.84
10005--10041	20	1.9	19	89	10	58	45	10	24	18	1.81
11081--11105	12	2.1	12	100	0	50	24	16	52	8	1.70
11642--11686	2	22.5	2	100	0	90	48	0	0	51	1.00
15683--15709	3	9.0	3	100	0	54	33	33	0	33	1.58
19813--19867	21	2.6	21	85	0	74	27	32	21	18	1.96
21904--21953	18	2.8	18	100	0	100	30	4	16	50	1.63
23933--23960	13	2.2	13	100	0	56	17	21	21	39	1.93
34320--34393	31	2.4	31	88	0	94	36	39	16	8	1.78
34318--34393	15	4.9	15	72	4	62	36	39	15	7	1.77
34339--34392	16	3.4	16	79	5	74	37	42	12	7	1.72
34342--34424	31	2.6	31	88	1	112	37	36	13	13	1.83
34830--34978	75	2.0	74	92	1	244	42	8	18	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38646--38811	60	2.8	60	89	0	233	39	13	8	38	1.75
40194--40287	20	4.8	19	79	14	102	47	20	19	12	1.81
40393--40461	6	11.5	6	100	0	138	33	50	15	0	1.45
40952--41080	6	21.5	6	100	0	258	0	16	50	33	1.45
41176--41541	20	18.2	20	82	11	407	15	19	22	42	1.88
44713--44772	31	1.9	31	86	3	84	46	3	0	50	1.18
44713--44785	33	2.2	32	83	7	85	47	2	0	49	1.15
50277--50331	25	2.2	25	100	0	110	49	0	0	50	1.00
50287--50329	12	3.5	12	75	6	50	53	0	0	46	1.00
59369--59414	24	1.9	23	83	16	58	47	17	4	30	1.67
66227--66296	34	2.1	32	89	5	104	24	28	15	31	1.96
66581--66622	21	2.0	21	95	0	75	26	28	21	23	1.99
66727--66793	19	3.5	19	91	0	89	35	13	10	40	1.79
66859--66918	29	2.0	31	90	6	97	41	16	6	35	1.75
69485--69567	29	2.8	29	90	1	130	42	10	14	32	1.80
74253--74335	29	2.8	29	90	1	130	42	10	14	32	1.80
77012--77060	7	6.9	7	90	4	80	57	0	2	40	1.10
77646--78036	208	1.9	208	93	0	683	40	5	8	45	1.59
79499--79543	21	2.1	21	83	0	54	55	4	0	40	1.20
79537--79589	14	3.8	13	82	9	61	43	1	0	54	1.11
84378--84426	24	2.0	24	96	0	89	28	40	8	22	1.82
86331--86410	21	3.8	21	75	6	81	23	32	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86835--86882	19	2.5	19	96	0	87	27	4	6	62	1.38
87573--87598	13	2.0	13	100	0	52	46	0	30	23	1.53
87917--87975	27	2.2	27	96	0	109	47	3	10	38	1.54
89200--89241	17	2.5	17	100	0	84	52	9	26	11	1.68
92875--92950	36	2.1	36	85	7	100	47	1	3	47	1.29

Tables:   1

The End!