genome.fa.s5927.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005927.1 Hibiscus syriacus cultivar Beakdansim tig00013915_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  407020

Tables:   1   2   

This is table  2  of  2  ( 149 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291310--291354	20	2.2	20	96	0	81	20	40	17	22	1.92
306795--306831	18	2.1	18	89	0	56	18	21	2	56	1.54
321025--321139	61	1.9	61	85	7	162	26	17	26	30	1.97
321249--321384	45	3.0	45	93	0	236	39	5	23	30	1.78
326334--326366	13	2.5	13	95	0	57	15	21	48	15	1.81
326371--326412	10	4.4	10	85	8	61	33	28	23	14	1.94
326371--326413	19	2.3	19	95	0	77	32	27	23	16	1.96
333585--333639	9	5.6	10	83	10	69	34	27	21	16	1.95
333592--333640	10	4.8	11	80	16	61	36	24	20	18	1.94
333592--333640	19	2.5	20	86	6	64	36	24	20	18	1.94
344071--344132	24	2.6	24	76	0	61	58	14	8	19	1.61
354237--354282	24	1.9	24	95	0	83	36	19	23	19	1.95
359209--359694	54	9.0	54	89	0	657	31	18	16	33	1.93
367778--367827	20	2.5	21	83	6	59	40	10	26	24	1.86
368234--368656	54	7.8	54	83	0	504	32	16	16	34	1.91
368234--368656	163	2.6	162	85	0	540	32	16	16	34	1.91
369373--369877	54	9.4	54	85	1	584	28	20	18	32	1.96
369373--369877	162	3.1	162	86	2	694	28	20	18	32	1.96
370319--370362	18	2.4	18	96	0	79	31	29	9	29	1.88
376040--376080	14	3.0	14	82	10	50	65	0	7	26	1.18
382538--382571	16	2.1	17	88	5	52	41	5	0	52	1.25
390727--390957	55	4.2	55	86	3	331	35	9	18	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395809--395984	95	1.9	92	84	5	237	40	13	22	23	1.90
396352--396523	55	3.1	54	83	3	227	37	11	16	35	1.84
397753--397796	20	2.2	20	91	0	70	34	31	22	11	1.90
402380--402417	20	1.9	20	100	0	76	28	15	18	36	1.92
403581--403909	93	3.6	92	74	5	288	34	12	17	35	1.87
403963--404348	93	4.2	93	78	5	318	35	10	17	37	1.84
406063--406104	21	2.0	21	81	9	50	45	2	0	52	1.13

Tables:   1   2

The End!