genome.fa.s5933.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005933.1 Hibiscus syriacus cultivar Beakdansim tig00013923_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171679

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3557--3602	22	2.1	22	95	0	83	23	32	23	19	1.97
4104--4186	21	4.0	20	90	6	121	26	24	24	25	2.00
10330--10375	22	2.1	22	91	0	74	21	32	26	19	1.97
10874--10957	21	4.0	21	89	3	123	27	23	23	25	2.00
10874--10957	43	2.0	43	88	2	125	27	23	23	25	2.00
19875--19908	3	11.3	3	93	0	59	64	0	35	0	0.94
22391--22428	19	2.0	19	90	10	60	26	5	13	55	1.59
22593--22646	3	18.0	3	100	0	108	33	0	0	66	0.92
24139--24180	21	2.0	21	86	9	59	21	16	30	30	1.95
24738--24770	10	3.7	9	88	11	50	48	0	0	51	1.00
26024--26051	2	14.0	2	100	0	56	50	0	0	50	1.00
28199--28282	31	2.7	31	77	1	87	38	13	10	38	1.79
36885--36987	53	1.9	53	98	0	197	20	26	12	40	1.88
44888--44928	10	4.1	10	84	9	57	19	39	0	41	1.52
48148--48202	18	2.9	18	74	10	56	32	27	16	23	1.96
48429--48486	24	2.5	21	75	25	55	32	22	5	39	1.76
69843--69983	31	4.5	31	96	0	255	19	19	22	39	1.93
74129--74267	31	4.5	31	94	0	242	20	19	20	39	1.93
79635--79695	20	2.9	21	85	7	70	16	26	32	24	1.96
89824--89865	18	2.3	19	88	12	70	64	4	7	23	1.38
95360--95414	24	2.3	24	100	0	110	65	3	10	20	1.39
99467--99533	33	2.1	31	86	8	91	55	8	1	34	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101537--101572	18	2.1	18	89	5	56	58	0	2	38	1.13
105264--105402	52	2.6	51	82	9	156	39	2	7	50	1.45
106407--106476	27	2.5	28	80	11	74	48	0	2	48	1.16
106455--106530	34	2.1	37	81	13	88	53	0	1	44	1.08
109768--109795	2	14.0	2	100	0	56	50	0	0	50	1.00
110665--110702	20	1.9	19	94	5	67	18	0	26	55	1.43
110669--110709	20	2.0	20	90	0	64	24	0	21	53	1.46
113795--114140	83	4.2	82	81	4	358	36	18	15	29	1.92
114121--114317	84	2.4	84	83	4	256	37	16	14	32	1.88
113795--114314	83	6.3	84	74	9	338	36	17	15	30	1.91
115727--115768	19	2.2	20	83	12	52	59	7	0	33	1.25
117330--117638	74	4.3	69	72	18	220	42	3	7	46	1.49
117330--117578	35	6.8	36	76	16	210	43	4	6	45	1.50
117466--117490	12	2.1	12	100	0	50	40	8	8	44	1.63
117419--117752	35	9.5	35	71	20	139	41	2	7	48	1.47
117601--117664	28	2.3	26	78	19	67	45	3	7	43	1.48
117650--117752	37	2.8	36	77	11	109	39	0	8	50	1.40
117650--117752	36	2.8	37	78	8	120	39	0	8	50	1.40
117816--117870	3	18.0	3	96	3	101	32	0	0	67	0.91
118927--118972	2	23.5	2	95	4	85	47	0	0	52	1.00
120945--120990	19	2.4	19	92	0	74	13	13	8	65	1.48
124337--125049	164	4.3	164	87	3	853	30	25	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124346--125049	80	8.6	80	80	5	629	30	25	20	23	1.99
125682--126105	34	11.8	35	72	17	179	42	3	7	46	1.49
125766--125995	35	6.4	37	71	20	148	42	3	6	47	1.46
125813--125837	12	2.1	12	100	0	50	40	8	8	44	1.63
125696--126105	37	11.5	38	70	15	190	42	2	7	47	1.47
125757--126117	176	2.1	175	78	12	377	42	2	7	47	1.46
126169--126228	3	20.0	3	100	0	120	33	0	0	66	0.92
127283--127313	2	15.5	2	100	0	62	48	0	0	51	1.00
129233--129275	22	2.0	21	81	4	50	58	6	2	32	1.38
129516--129614	52	1.9	52	83	4	128	51	13	9	26	1.70
132685--132748	23	2.8	23	80	0	83	50	10	20	18	1.77
136278--136339	22	2.7	22	80	12	63	37	8	1	53	1.40
136285--136330	24	2.0	24	87	12	69	32	8	0	58	1.28
136370--136543	84	2.1	85	88	1	260	41	10	9	39	1.71
143463--143588	34	3.8	34	75	17	138	42	10	15	30	1.81
143479--143562	31	2.7	29	72	24	80	45	7	16	30	1.74
147335--147424	24	3.7	25	70	19	66	74	8	15	1	1.12
147336--147409	16	4.6	17	73	19	52	75	8	16	0	1.02
148045--148087	22	2.0	22	95	0	77	34	27	13	23	1.93
148521--148556	18	2.0	18	88	0	54	16	8	36	38	1.79
148697--148755	29	2.0	29	100	0	118	35	13	27	23	1.92
148929--149063	36	3.8	37	74	7	100	25	20	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149188--149318	65	2.0	66	91	4	212	35	27	18	19	1.95
149602--149845	105	2.3	106	88	2	348	34	25	18	21	1.96
150394--150519	34	3.8	34	75	17	138	42	10	15	30	1.81
150410--150493	31	2.7	29	72	24	80	45	7	16	30	1.74
150994--151062	24	3.0	23	75	8	68	24	5	2	66	1.27
152340--152366	13	2.1	13	100	0	54	37	7	22	33	1.82
152841--152886	19	2.4	20	78	10	60	41	0	2	56	1.11
153496--153621	50	2.5	50	83	2	164	15	36	27	19	1.93
153894--154115	111	2.0	111	93	1	383	35	8	11	45	1.70
155950--156003	6	9.5	6	74	11	51	33	18	33	14	1.92
155950--156001	27	1.9	27	92	0	86	32	17	34	15	1.91
155963--156008	21	2.2	21	88	0	65	34	17	32	15	1.91
155951--156008	27	2.1	27	83	0	71	36	18	31	13	1.90
159901--160022	50	2.4	49	82	4	145	22	28	34	14	1.94
160117--160599	267	1.8	264	88	2	743	48	10	8	31	1.68
161081--161128	23	2.1	23	84	0	60	27	20	22	29	1.99
164283--164392	39	2.8	40	87	2	150	32	17	13	36	1.89
164566--164590	12	2.1	12	100	0	50	52	8	0	40	1.31
165102--165163	24	2.5	26	77	17	69	64	1	1	32	1.13
167620--167659	3	13.3	3	100	0	80	32	0	0	67	0.91
168432--168507	33	2.3	34	84	9	102	31	13	18	36	1.89
168448--168510	33	1.9	33	93	0	108	31	11	17	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168590--168627	12	3.0	13	81	18	53	63	0	0	36	0.95
168972--169735	84	9.2	83	77	5	706	24	19	24	31	1.98
168955--169729	165	4.7	164	80	5	747	25	19	24	30	1.98
169016--169729	249	2.9	249	89	1	1070	25	19	24	30	1.98
169869--170016	67	2.3	65	82	6	176	29	17	20	32	1.96
169849--170302	176	2.6	177	87	3	636	26	17	22	33	1.96
170109--170415	110	2.8	110	91	2	492	25	18	22	33	1.97

Tables:   1

The End!